PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027115592.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 999aa MW: 110572 Da PI: 6.913

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027115592.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28.1	5.2e-09	222	283	20	82
trihelix 20 rlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 + rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e++++ +++ +yf XP_027115592.1 222 APARGKTRADKDREVAEFLNRHGVSRDAKTAGTKWDNMLGEFRKVYEWERGGERDQV-GKSYF 283 556788999999**************************************9955444.44555 PP

Sequence ? help Back to Top
Protein Sequence Length: 999 aa Download sequence
MSDSKGDSKQ HLSTPAEDPD QEPTENISQQ QQQHQQQQQH GIGLTGAPFV SAPSYIPSVA 60 TAGSFEQQQQ QQLHFEAVNP KRPRYTAGQW KLSPSASSQQ PPQKRQTQTN ILVATESSPS 120 PTPTQVATNP QTVAVAASSS DTASSPSHSP RPSHSAASGH EAANPEGSLF QHQQFRKGKY 180 VSPVWKPNEM LWLARAWRVQ YQGGGGSESG EGGAAADVAA TAPARGKTRA DKDREVAEFL 240 NRHGVSRDAK TAGTKWDNML GEFRKVYEWE RGGERDQVGK SYFRLSPYER KLHRLPASFD 300 EEVFEELSQF MSSRMRTHSR GVSPGIVSGG IGGDDGRSVL ATTTKSSLAT PPPYREEDLS 360 LPAARSKQLV ATSSGAEAFP LGGRGGTTLG FETSLDVLGG GPSTSTYSKE FRRIGKIRMI 420 WEESVSLWAE EGEHHSGRVK IQGSSFLNAD EIAFLDDSMV ACTMEAFEDG PLKGFSVDRF 480 LPGQHVKVFG RRKSFFVPVP IPSGPSERVP VHSAEPSNIS RPIPAWEFQD PSDYYLGCLR 540 VPPPTLPSLF ELSWHLQEPP PEEFRFPLRK DVYKDLPQGK DLFFSISSEL LDCRAIAYDI 600 LSPIMRQNPS LSGASASARD SFIGLWDDCV NRIVSKFCAV EMVFVRKSSS PLAETMQDEW 660 PNVTAFVRNF CLWRGEETDQ LREGQIDPSS SIVEKLLWTY ADLPYVLGYY AVGYIVTFCA 720 MSRSQDRIVR TDLYTVDLST PMERLKALVP CWRIAGLLPL LADRCSQSSM SINGGDVSYR 780 LLPYSDFERI DLGSGSILEM TPNSVTRLFS SKRRWAAVKE IYDFLDHRIP HVEFIIRSSE 840 KDLGIVFKPR GCKLKPTSCD QLIEALKQVT KALVALHDLS FMHRDLGWEK VTKRSDRENE 900 WFITGFDEAV SAPQIYPHGG AASGRHAPEM GRGLHGVKVD VWGVGQLVKT CGLVAVPKLL 960 RELQNRCLDH NPEQRPTAAD CYHHLLQLQS SMSAAAGGY

Sequence ? help Back to Top

Protein Sequence Length: 999 aa Download sequence

MSDSKGDSKQ HLSTPAEDPD QEPTENISQQ QQQHQQQQQH GIGLTGAPFV SAPSYIPSVA  60
TAGSFEQQQQ QQLHFEAVNP KRPRYTAGQW KLSPSASSQQ PPQKRQTQTN ILVATESSPS  120
PTPTQVATNP QTVAVAASSS DTASSPSHSP RPSHSAASGH EAANPEGSLF QHQQFRKGKY  180
VSPVWKPNEM LWLARAWRVQ YQGGGGSESG EGGAAADVAA TAPARGKTRA DKDREVAEFL  240
NRHGVSRDAK TAGTKWDNML GEFRKVYEWE RGGERDQVGK SYFRLSPYER KLHRLPASFD  300
EEVFEELSQF MSSRMRTHSR GVSPGIVSGG IGGDDGRSVL ATTTKSSLAT PPPYREEDLS  360
LPAARSKQLV ATSSGAEAFP LGGRGGTTLG FETSLDVLGG GPSTSTYSKE FRRIGKIRMI  420
WEESVSLWAE EGEHHSGRVK IQGSSFLNAD EIAFLDDSMV ACTMEAFEDG PLKGFSVDRF  480
LPGQHVKVFG RRKSFFVPVP IPSGPSERVP VHSAEPSNIS RPIPAWEFQD PSDYYLGCLR  540
VPPPTLPSLF ELSWHLQEPP PEEFRFPLRK DVYKDLPQGK DLFFSISSEL LDCRAIAYDI  600
LSPIMRQNPS LSGASASARD SFIGLWDDCV NRIVSKFCAV EMVFVRKSSS PLAETMQDEW  660
PNVTAFVRNF CLWRGEETDQ LREGQIDPSS SIVEKLLWTY ADLPYVLGYY AVGYIVTFCA  720
MSRSQDRIVR TDLYTVDLST PMERLKALVP CWRIAGLLPL LADRCSQSSM SINGGDVSYR  780
LLPYSDFERI DLGSGSILEM TPNSVTRLFS SKRRWAAVKE IYDFLDHRIP HVEFIIRSSE  840
KDLGIVFKPR GCKLKPTSCD QLIEALKQVT KALVALHDLS FMHRDLGWEK VTKRSDRENE  900
WFITGFDEAV SAPQIYPHGG AASGRHAPEM GRGLHGVKVD VWGVGQLVKT CGLVAVPKLL  960
RELQNRCLDH NPEQRPTAAD CYHHLLQLQS SMSAAAGGY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	7e-07	Trihelix family protein