PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027115287.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 274aa    MW: 30235.1 Da    PI: 9.8981
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027115287.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.72.7e-1377121147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT +E++++++a +++  + Wk+I + +g  +t  q++s+ qky
   XP_027115287.1  77 RESWTDQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 121
                      789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MVSVYPTPPA AHQQDFYYFP GMGDPMKVGL PGLHSLQPPT NVTGTTGTGN VIDSGTGVVS  60
EDPNKKVRKP YTITKSRESW TDQEHDKFLE ALQLFDRDWK KIEAFVGSKT VIQIRSHAQK  120
YFLKVQKSGT SEHVPPPRPK RKASHPYPQK APKTAGPQVT GQLHSSSALV EPKYVMRPDS  180
LSVPGNSVSN PVVSPWTYNT VPTANTLYLT KDKDMGLAGA TITHNYSSSS NESTPRIWPI  240
NETSDQVKEK DNKPAREIAE LPYHVEVSGK KGKI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.26e-62MYB_related family protein