PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027115229.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 642aa MW: 72496.5 Da PI: 8.1445

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027115229.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.5	6.4e-08	545	593	2	47
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 ++WT+eE++++ + vk + W+ I + ++ +R++++++s+++++ XP_027115229.1 545 LSWTKEEEKKFHNIVKSNPLSlgkcFWHEIVKAFP-NRSRESLVSYYFNV 593 58************877667777******.*********995 PP

Sequence ? help Back to Top
Protein Sequence Length: 642 aa Download sequence
MAGWLKRVDG SGLESFKFNR KVEEAKQPSW LDHNSPVSKG SVSASTTAAK REEEKGSSGN 60 LKSSFDEFLP VFLKKSFGIL CFRPLPPMLG NGQSVDLFKV YLNVRDRGGL EKVSKTGQWG 120 SVALECGVDS SSASALKLVY VKYLDTLDKS LQRVVRGESS ERGANESGLD ILKELLMDLE 180 SDLKGFLSGI VDNKKKDGEV MSVELKKKEF DFESGGKFAR LDEVGGLVKL NGDAEDGDKT 240 SAADDGGECG FVSFDVEEKP DGVDNLFEVG IREERRMEDG DTQLDSSSRK EDLVRRKRRR 300 ESYLSMLKWI NRVARDPCDP AIGFLPDKSK WKYYANDLVW KQALLVREAM MSKRNSESSD 360 QHSILQKKQK MHPVLYDDQV GSERQRFSQR LLSAKDPSKK SRARNFSESC SSGTQSDEEF 420 NDTQSDSSSD SEADFVGSRR HRKKRIPLGP QFQADVPEWT GKACESDSKW LGTQYWPLVR 480 VEQNRNLIER ERIGKGRLDS CGCQIPGSLE CVRFHVSEKR TRVKLELGPA FYRWKFDNMG 540 EDVALSWTKE EEKKFHNIVK SNPLSLGKCF WHEIVKAFPN RSRESLVSYY FNVCLLHRRG 600 YQNRVTPTDI NSDDDESESS YGSAKPPGSI FCSPKKPHLN IG

Sequence ? help Back to Top

Protein Sequence Length: 642 aa Download sequence

MAGWLKRVDG SGLESFKFNR KVEEAKQPSW LDHNSPVSKG SVSASTTAAK REEEKGSSGN  60
LKSSFDEFLP VFLKKSFGIL CFRPLPPMLG NGQSVDLFKV YLNVRDRGGL EKVSKTGQWG  120
SVALECGVDS SSASALKLVY VKYLDTLDKS LQRVVRGESS ERGANESGLD ILKELLMDLE  180
SDLKGFLSGI VDNKKKDGEV MSVELKKKEF DFESGGKFAR LDEVGGLVKL NGDAEDGDKT  240
SAADDGGECG FVSFDVEEKP DGVDNLFEVG IREERRMEDG DTQLDSSSRK EDLVRRKRRR  300
ESYLSMLKWI NRVARDPCDP AIGFLPDKSK WKYYANDLVW KQALLVREAM MSKRNSESSD  360
QHSILQKKQK MHPVLYDDQV GSERQRFSQR LLSAKDPSKK SRARNFSESC SSGTQSDEEF  420
NDTQSDSSSD SEADFVGSRR HRKKRIPLGP QFQADVPEWT GKACESDSKW LGTQYWPLVR  480
VEQNRNLIER ERIGKGRLDS CGCQIPGSLE CVRFHVSEKR TRVKLELGPA FYRWKFDNMG  540
EDVALSWTKE EEKKFHNIVK SNPLSLGKCF WHEIVKAFPN RSRESLVSYY FNVCLLHRRG  600
YQNRVTPTDI NSDDDESESS YGSAKPPGSI FCSPKKPHLN IG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	296	300	RKRRR