PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027113631.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 435aa MW: 47186.8 Da PI: 7.6834

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027113631.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55	1.4e-17	234	288	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_027113631.1 234 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 288 778899***********************************************98 PP
2	HD-ZIP_I/II	127.4	6.3e-41	234	324	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eLr +lk XP_027113631.1 234 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTDENRRLHKELQELR-ALK 324 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence
MELGLSLGGE NPSKPFGFTA KANGSSEKQN HPNNTNNKDS SSSAKLGLGF CMALGINNNS 60 NETRESRRNS ESKDNDGMDA DADDVDEDDD RTSSEHTRDD DDRRRGISVD TPLQLNLLPL 120 APVPRRTPIH TQPLRWSSDN GSSGSSGNVG LPVVGRGFDV NRVPAVGGVA EEVSSPNSVA 180 SSFQMDFSIF RGGGNLGNGG NKRDFGAAGG NDVVEAERTS SRASDEDENG LNTRKKLRLS 240 KEQSAYLEES FKEHNTLNPK QKLALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCEYLK 300 RCCETLTDEN RRLHKELQEL RALKTSNPFY MQLPATTLTM CPSCERVATT STAPSTTTTT 360 AAAAAPVPST TTTTPATNVK STTTATTTTS DNAPKAIPFP ISRPRFYPFA AAAAAAAHTN 420 HPHHHHHHHH QSAAS

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence

MELGLSLGGE NPSKPFGFTA KANGSSEKQN HPNNTNNKDS SSSAKLGLGF CMALGINNNS  60
NETRESRRNS ESKDNDGMDA DADDVDEDDD RTSSEHTRDD DDRRRGISVD TPLQLNLLPL  120
APVPRRTPIH TQPLRWSSDN GSSGSSGNVG LPVVGRGFDV NRVPAVGGVA EEVSSPNSVA  180
SSFQMDFSIF RGGGNLGNGG NKRDFGAAGG NDVVEAERTS SRASDEDENG LNTRKKLRLS  240
KEQSAYLEES FKEHNTLNPK QKLALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCEYLK  300
RCCETLTDEN RRLHKELQEL RALKTSNPFY MQLPATTLTM CPSCERVATT STAPSTTTTT  360
AAAAAPVPST TTTTPATNVK STTTATTTTS DNAPKAIPFP ISRPRFYPFA AAAAAAAHTN  420
HPHHHHHHHH QSAAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	233	239	TRKKLRL
2	283	291	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	4e-71	HD-ZIP family protein