PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027113299.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 615aa MW: 72972.4 Da PI: 8.8164 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.6 | 5e-09 | 94 | 121 | 1 | 26 |
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++ tC++G C+F+H+ XP_027113299.1 94 WKVAICGEYMKSKlkTCSRGTACNFIHC 121 899************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 615 aa Download sequence |
MAALCCSRLL KNHYTEEEVE RSYEEFYEDV HTEFLKFGEI VNFKVCRNGS YHLRGNVYVH 60 YRELDSAVLA RRFINGRYFA GKQVNCEFVG VTRWKVAICG EYMKSKLKTC SRGTACNFIH 120 CFRNPGGDYE WADWEKPPPK YWVKRMAALF GYSHESGYDK WVEQETKGQR RNSSKSLIAD 180 EERYRSRRSL SREIKSSNSS PRDNYKEDKF RRSKYSKRYR SDDTKRLEVP DEREYEEERQ 240 SRSHQRGKRG QYEREFDRAW LDEEKDADGY YYSTRNTRES SRSPFRRRSQ SHDCREIDKR 300 KIPEKISRKN HALSGTANDS DCNKEASAYT DSGRDFSHEN KDCISSRDLL YRRGASDSDS 360 AGDWSDWIIE SRRVQTRKSS ARVDEAAGFS SDLQESGKSL HDKYDENGSE HAKPNLQRGW 420 RRTSSCKRKT RGDDYSDEDE DSDTRGRREI DKDDTREHHR HNHSSRKTRK ADYADYADEN 480 IDERGHLETE KVDSREHHKH NRSGRKTSKA DYADKHDEDI DKRGCWEPEM VDAREYHKHN 540 HSSRKTRKCD YAGEHHEDID KGGHWEPEKL DTREHHEHRR KSHGRSGSHD QNVDKHSRKS 600 RSSNQKRKSY SRERD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 8e-76 | C3H family protein |