PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027113238.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 243aa MW: 27293.6 Da PI: 5.5174

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027113238.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.1	2.7e-27	79	167	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 kfY +YA++vGF vr+ + ++s+++g++ r++ C+k+g++ +++ + + +r+r + r gCka++ vk+ek+gkw+vt+++++HnH+l XP_027113238.1 79 KFYIDYARKVGFVVRIMQRRRSETDGRTLARRLGCNKQGFSPNNQGSVASGKRPRCSAREGCKATILVKMEKSGKWVVTRFVKDHNHPL 167 6**************************************************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MSPAELIAYV DLDKEDRNRE EENNSEGKEG EDVVGEGNAE ELDANDVMDV DGNTGQLKDS 60 EVLEPYVGME FESEDAARKF YIDYARKVGF VVRIMQRRRS ETDGRTLARR LGCNKQGFSP 120 NNQGSVASGK RPRCSAREGC KATILVKMEK SGKWVVTRFV KDHNHPLIIS ARGVSNGVDK 180 DKKIEQLTLE LQRQDQLCTA YRNKLLNFLA SVEEQGEHLS SKINGVIENV KKIEAEIQKS 240 SCH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	1e-72	FAR1 family protein