PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027112622.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family LBD
Protein Properties Length: 193aa    MW: 20883.9 Da    PI: 8.1353
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027112622.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.39.2e-322103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C++lr++C+++C+l++ +     p++q++++ +v+k+FG++ ++++l+a+pe +r+++++sl+yeA+ r+ +Pv+G+vg+++++++ql+q+
  XP_027112622.1   2 SCNGCRILRKGCNENCILRQSLqgigsPQAQANATVFVAKFFGRAGLMSFLSAVPEPQRPALFQSLLYEACGRTVNPVSGVVGLLWTGNWQLCQS 96 
                     6********************************************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  XP_027112622.1  97 AVETVLR 103
                     *998775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MSCNGCRILR KGCNENCILR QSLQGIGSPQ AQANATVFVA KFFGRAGLMS FLSAVPEPQR  60
PALFQSLLYE ACGRTVNPVS GVVGLLWTGN WQLCQSAVET VLRGGVLRPM MNLPSEPQEA  120
VDHDDASEAS RLCLNLSAAL PARVTAGGRV KRRSATPEES ETSTMESCYD YTASNCYQNL  180
KGGEGTKLLR LFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.13e-63LBD family protein