PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027112486.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 842aa MW: 92179.4 Da PI: 6.7962

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027112486.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.6	2.7e-19	314	413	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ +++ e+ ++++d +g++W++++++ +++s++yvl+ G + +L++gD+v+F++++ +++ XP_027112486.1 314 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSEGLPIRIQDVKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVTFSRID-PGGQ 406 99************************666667778***********99899999999.*******************887.6666 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_027112486.1 407 LVMGFRK 413 6666655 PP

Sequence ? help Back to Top
Protein Sequence Length: 842 aa Download sequence
MGSKICMNEV CRLTTSPEWK QGWGLKSGGF ATLCSSCGTA YENLVFCEKF HLDEDGWREC 60 KICRKRIHCG CVASKMLHEF LDFGGVGCIT CVKQMDTPSL RTVKILGDEI PNGTIGHRSF 120 DSLLQLCNNV DVNGSKKMFK PHKVGTNASL GQKKGEGTAL PFEQVNTSSP NFTPQSVGSS 180 MFVKPEISRQ NQGFKDMAES LAQPSVNFSL SNALSASGSA LPISEGIVEG SEQNRVSTAQ 240 QGQRARQILP KPPKPGSSVG SENTKGMGSQ TRIARPPAEG RGRSQLLPRY WPRITDQELQ 300 QISGDLKSTV VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPINQSEGLP IRIQDVKGKE 360 WTFQFRFWPN NNSRMYVLEG VTPCIQNMQL QAGDTVTFSR IDPGGQLVMG FRKSTTNVET 420 QDPQPSGLPN GGSPGETSYL GASDNMLAIS ENGNNGGQIH EDSSQRNILI PEKKKARNIG 480 LKNKRLLMHS DDAMELRVTW EEAQELLRPP TNSPTIIKIE DCEFEEYDQE PPIFGKRTIF 540 TVQPSGQQEQ WAQCDNCSKW RRLPMHVLVP ARWTCPDNAW VLNSTCSAPD DINPRELEAL 600 NIASKDFKRR RIVEAKVAED YEPSGLDALA TAAVLGDNMG DLTEMSVGAT TKHPRHRPGC 660 SCIVCIQPPS GKGKHPPSCK CNVCLTVKRR FKTLMMRKKK RQSDREAELL QGKDQETPPL 720 DMSEMEGAAE QALLLTNHSD AERSQNGSLM EAGESNKGQL DLNCHPSREE DMLAEAAAGI 780 NLATLIDAAS IPLDVYMRQD GVASLSHHLL PSHAPGDGEG SLPEEGCSAS ANMGPEKKGK 840 EE

Sequence ? help Back to Top

Protein Sequence Length: 842 aa Download sequence

MGSKICMNEV CRLTTSPEWK QGWGLKSGGF ATLCSSCGTA YENLVFCEKF HLDEDGWREC  60
KICRKRIHCG CVASKMLHEF LDFGGVGCIT CVKQMDTPSL RTVKILGDEI PNGTIGHRSF  120
DSLLQLCNNV DVNGSKKMFK PHKVGTNASL GQKKGEGTAL PFEQVNTSSP NFTPQSVGSS  180
MFVKPEISRQ NQGFKDMAES LAQPSVNFSL SNALSASGSA LPISEGIVEG SEQNRVSTAQ  240
QGQRARQILP KPPKPGSSVG SENTKGMGSQ TRIARPPAEG RGRSQLLPRY WPRITDQELQ  300
QISGDLKSTV VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPINQSEGLP IRIQDVKGKE  360
WTFQFRFWPN NNSRMYVLEG VTPCIQNMQL QAGDTVTFSR IDPGGQLVMG FRKSTTNVET  420
QDPQPSGLPN GGSPGETSYL GASDNMLAIS ENGNNGGQIH EDSSQRNILI PEKKKARNIG  480
LKNKRLLMHS DDAMELRVTW EEAQELLRPP TNSPTIIKIE DCEFEEYDQE PPIFGKRTIF  540
TVQPSGQQEQ WAQCDNCSKW RRLPMHVLVP ARWTCPDNAW VLNSTCSAPD DINPRELEAL  600
NIASKDFKRR RIVEAKVAED YEPSGLDALA TAAVLGDNMG DLTEMSVGAT TKHPRHRPGC  660
SCIVCIQPPS GKGKHPPSCK CNVCLTVKRR FKTLMMRKKK RQSDREAELL QGKDQETPPL  720
DMSEMEGAAE QALLLTNHSD AERSQNGSLM EAGESNKGQL DLNCHPSREE DMLAEAAAGI  780
NLATLIDAAS IPLDVYMRQD GVASLSHHLL PSHAPGDGEG SLPEEGCSAS ANMGPEKKGK  840
EE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	608	612	KRRRI
2	688	699	KRRFKTLMMRKK
3	688	701	KRRFKTLMMRKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	0.0	B3 family protein