PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027112476.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 333aa    MW: 37173 Da    PI: 9.2554
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027112476.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.14.2e-15387799
                    .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    +s+v++  +l lp +f+++h+ k   +k ++lede+g+++e ++     +  + l++GWk F  a++L egD+vv +l+g+ +f  +v ++r+
  XP_027112476.1  3 RSHVTQGFWLGLPVDFCRKHMPK--HDKLVILEDENGKEYEARF--LAAK--VGLSGGWKPFSIAQKLVEGDVVVYHLVGDCRF--KVYIVRA 87
                    6899999*************855..6679***************..5555..55**************************9999..8888775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MQRSHVTQGF WLGLPVDFCR KHMPKHDKLV ILEDENGKEY EARFLAAKVG LSGGWKPFSI  60
AQKLVEGDVV VYHLVGDCRF KVYIVRATSL GEVDGALGLL NLENHPSGRH SGGGGEGTKG  120
TDMKGDGAII LNDAEGSGKS ISFVNFQSFN IIANNLILDS ELPKYVRLKY YDLCCAQKSY  180
LHVGLLKSIS CALASGIISE TVKIADAIKS CKILTPQEDF ALWDKTLEGF ELLGMEVGFL  240
RARLNKLVKL AMRSRKIQES KRYKQARIEH YFVTEEVETL EKKLKEKHQL RLLQQVFPAA  300
VRRSSRVTDK PPPSYKEASF LIIDSTTNLT PAI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-31B3 family protein