PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027112474.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 407aa MW: 45969 Da PI: 9.2571

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027112474.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.1	2.4e-16	71	161	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k + +s+v++ +l lp +f+++h+ k +k ++lede+g+++e ++ + + l++GWk F a++L egD+vv +l+g+ +f +v XP_027112474.1 71 FLKLMQRSHVTQGFWLGLPVDFCRKHMPK--HDKLVILEDENGKEYEARF--LAAK--VGLSGGWKPFSIAQKLVEGDVVVYHLVGDCRF--KVY 157 8999********************855..6679***********..5555..55************************9999..888 PP EE-S CS B3 96 vfrk 99 ++r+ XP_027112474.1 158 IVRA 161 8775 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MEREQPEEPT SESNHEDHMT LHQYLLSKGK PIIHHCSPSE VLRRSKRNRQ CPEISEINKV 60 IGDRHKRSRD FLKLMQRSHV TQGFWLGLPV DFCRKHMPKH DKLVILEDEN GKEYEARFLA 120 AKVGLSGGWK PFSIAQKLVE GDVVVYHLVG DCRFKVYIVR ATSLGEVDGA LGLLNLENHP 180 SGRHSGGGGE GTKGTDMKGD GAIILNDAEG SGKSISFVNF QSFNIIANNL ILDSELPKYV 240 RLKYYDLCCA QKSYLHVGLL KSISCALASG IISETVKIAD AIKSCKILTP QEDFALWDKT 300 LEGFELLGME VGFLRARLNK LVKLAMRSRK IQESKRYKQA RIEHYFVTEE VETLEKKLKE 360 KHQLRLLQQV FPAAVRRSSR VTDKPPPSYK EASFLIIDST TNLTPAI

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MEREQPEEPT SESNHEDHMT LHQYLLSKGK PIIHHCSPSE VLRRSKRNRQ CPEISEINKV  60
IGDRHKRSRD FLKLMQRSHV TQGFWLGLPV DFCRKHMPKH DKLVILEDEN GKEYEARFLA  120
AKVGLSGGWK PFSIAQKLVE GDVVVYHLVG DCRFKVYIVR ATSLGEVDGA LGLLNLENHP  180
SGRHSGGGGE GTKGTDMKGD GAIILNDAEG SGKSISFVNF QSFNIIANNL ILDSELPKYV  240
RLKYYDLCCA QKSYLHVGLL KSISCALASG IISETVKIAD AIKSCKILTP QEDFALWDKT  300
LEGFELLGME VGFLRARLNK LVKLAMRSRK IQESKRYKQA RIEHYFVTEE VETLEKKLKE  360
KHQLRLLQQV FPAAVRRSSR VTDKPPPSYK EASFLIIDST TNLTPAI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	7e-32	B3 family protein