PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027112473.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 407aa    MW: 45974.1 Da    PI: 8.6819
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027112473.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.74.1e-131141871899
                     --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     lp +f+++h+ k   +k ++lede+g+++e ++     +  + l++GWk F  a++L egD+vv +l+g+ +f  +v ++r+
  XP_027112473.1 114 LPVDFCRKHMPK--HDKLVILEDENGKEYEARF--LAAK--VGLSGGWKPFSIAQKLVEGDVVVYHLVGDCRF--KVYIVRA 187
                     8********855..6679***************..5555..55**************************9999..8888775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    
MEREQPEEPT SESNHEDHMT LHQYLLSKGK PIIHHCSPSE VLRRSKRNRQ CPEISEINKV  60
IGDRHKRSRD FLKLMQRSHV TQGFWLVSPC LSRLKELTGY QLLCLTLYIQ VQGLPVDFCR  120
KHMPKHDKLV ILEDENGKEY EARFLAAKVG LSGGWKPFSI AQKLVEGDVV VYHLVGDCRF  180
KVYIVRATSL GEVDGALGLL NLENHPSGRH SGGGGEGTKG TDMKGDGAII LNDAEGSGKS  240
ISFVNFQSFN IIANNLILDS ELPKYVRLKY YDLCCAQKSY LHVGLLKSIS CALASGIISE  300
TVKIADAIKS CKILTPQEDF ALWDKTLEGF ELLGMEVGFL RARLNKLVKL AMRSRKIQES  360
KRYKQARIEH YFVTEEVETL EKKLKEKHQV TSAGFPCCCE KVQSSHR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-26B3 family protein