PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027112465.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 299aa    MW: 34156.2 Da    PI: 8.2258
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027112465.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3505.2e-16115205199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v k  +l+lp+ f++ h  +   ++t++lede+ +++  k+    ++++  l++GW +F  a++L egD++vF+++     +l+v 
  XP_027112465.1 115 FVKPMIRSNVKKGFWLSLPRLFCKLHLPD--HDTTIVLEDENRKEYITKY--LAQRRG--LSAGWMGFSIAHKLVEGDVLVFHMVI--ANKLKVY 201
                     89*********************999433..5679***************..666655..9**********************764..4455788 PP

                     EE-S CS
              B3  96 vfrk 99 
                     v+r+
  XP_027112465.1 202 VIRS 205
                     7775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MMKRKKRFET MRKLLEIDEM PWGIRFKPKQ QEEICLEEQR YEEEQQAHSP SSKFSEHKLF  60
HPTLRVGAKK PSQSRSCKRR MVGMHDLCGQ IKVTSSVMQR AEAVQETLDA KFPSFVKPMI  120
RSNVKKGFWL SLPRLFCKLH LPDHDTTIVL EDENRKEYIT KYLAQRRGLS AGWMGFSIAH  180
KLVEGDVLVF HMVIANKLKV YVIRSSRLAE VDAALCLLQL EGPATGNESG HRGDDCGDPQ  240
PTGEESKSCS QPECENISDK DMLDNNLGLV TGRPESIDEH LQLALEGRRG SFSGLHYRD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1329KRKKRFETMRKLLEIDEMPWGIRFKPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-37B3 family protein