PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027111717.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 478aa MW: 53731.4 Da PI: 10.5644

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027111717.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.9	4e-07	12	47	2	38
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 +rW t+E+++l av ++G+ +W+ +a+++ Rtl+ XP_027111717.1 12 KRWGTWEELILGGAVLRHGTQDWNVVASELR-ARTLY 47 69*****************************.99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MGAEAMVVGP DKRWGTWEEL ILGGAVLRHG TQDWNVVASE LRARTLYPYC FTPQACKAKY 60 EDLRRRYSGS NAWFDELRKR RVAELKRELE KSEDSIGSLE TKIEILKAEK RHSSKADCGS 120 NGTESPAPLL RSDGNESFGK ETSKDGLSAS SFTQDTSISW SLYRQIPVLV SCAGTDIKQE 180 VSVSLEEQKD LHTKKLVETG NREGGTPRKR RGMRKRKDCN IEAKEGSIGE SDNHGSTNVV 240 SSSRCKETST SDCDQTIRLP GRDGNTKGAC QMRSDCLIGI FNSIAEYKVA FVFRHRLDSQ 300 KRARYKKIIR QHMDFDMIRS RLVSCSIHSA RELFRDLLLL ANNALVFYSK RTREYKSAVA 360 LRDIVLKAYR QHFKGSYNKA TSASLPMRSL YNPPVKPRSA RRRPSQPKQS AKLDKAEKFV 420 VNAPKVHPKP GDPDANVPLQ SLLTAKKGVK RPLKVKTASA KPQSKTPLPK DKKAARQR

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MGAEAMVVGP DKRWGTWEEL ILGGAVLRHG TQDWNVVASE LRARTLYPYC FTPQACKAKY  60
EDLRRRYSGS NAWFDELRKR RVAELKRELE KSEDSIGSLE TKIEILKAEK RHSSKADCGS  120
NGTESPAPLL RSDGNESFGK ETSKDGLSAS SFTQDTSISW SLYRQIPVLV SCAGTDIKQE  180
VSVSLEEQKD LHTKKLVETG NREGGTPRKR RGMRKRKDCN IEAKEGSIGE SDNHGSTNVV  240
SSSRCKETST SDCDQTIRLP GRDGNTKGAC QMRSDCLIGI FNSIAEYKVA FVFRHRLDSQ  300
KRARYKKIIR QHMDFDMIRS RLVSCSIHSA RELFRDLLLL ANNALVFYSK RTREYKSAVA  360
LRDIVLKAYR QHFKGSYNKA TSASLPMRSL YNPPVKPRSA RRRPSQPKQS AKLDKAEKFV  420
VNAPKVHPKP GDPDANVPLQ SLLTAKKGVK RPLKVKTASA KPQSKTPLPK DKKAARQR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	64	81	RRRYSGSNAWFDELRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42150.1	2e-37	MYB_related family protein