PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027111696.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 684aa MW: 75208.4 Da PI: 8.4527

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027111696.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.1	3.8e-19	338	437	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_027111696.1 338 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDLKGKEWVFQFRFwpNNNSRMYVLE-GITPCIQSMQLQAGDVVTFSRIE-PEGK 430 89************************555566778***********99899999999.*******************887.5665 PP .EEEEE- CS B3 92 lvvkvfr 98 lv++ ++ XP_027111696.1 431 LVMGCRK 437 6665554 PP

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence
MAASAAASTA SLAKVCFNSN CKETLERPRK GWRRRTGEFA DLCDRCASAY EDGKFCESFH 60 LDASGWRCCE SCGKQIHCGC IVSFHMFVLL DAGGIECITC ARKSFILTPN PAWPPPSLFL 120 PLQPERIKDI SVKNWSPIAG SGPVPWRQAP SLFNGSAIQS ELQPRVPTPI EFDVSGGVDR 180 LQLNERLSSS LEKKKKEESF ERFMNGSLRI CSSEFGSGTS GAMGKEQSFP FSNASPQTGY 240 PSTSDFSVAT APALENGSNN HTKASGTLIQ QTTQPTPSEK RPCGHNPADS SEGQPRNGRA 300 RPEVRARSQL LPRYWPRITD QELQQISGDS NSVITPLFEK MLSASDAGRI GRLVLPKKCA 360 EAYFPPISQP EGLPLKVQDL KGKEWVFQFR FWPNNNSRMY VLEGITPCIQ SMQLQAGDVV 420 TFSRIEPEGK LVMGCRKASC APSDQGNEAS NAGQGYSSNG DVAPKSNKAG EITKPGELVS 480 TNSRMKGYSA SSSCPSLNRA AAKSGSTWPE LDKRVHVAKV VEAKPAVRSK RKNSTLGLKS 540 KRLRIENEDM LELKVTWEQV QGLLRPPPNK APSVFVIEGC EIEEYEQDAP VIGRPTIPGT 600 DHQGKKIQWA QCEECSKWRK IPADALLPSK WTCSQNLWDP ERSLCSTVQE LSMEKLQDLL 660 PAISKSMNFF LFPSSHCIKN PSCF

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence

MAASAAASTA SLAKVCFNSN CKETLERPRK GWRRRTGEFA DLCDRCASAY EDGKFCESFH  60
LDASGWRCCE SCGKQIHCGC IVSFHMFVLL DAGGIECITC ARKSFILTPN PAWPPPSLFL  120
PLQPERIKDI SVKNWSPIAG SGPVPWRQAP SLFNGSAIQS ELQPRVPTPI EFDVSGGVDR  180
LQLNERLSSS LEKKKKEESF ERFMNGSLRI CSSEFGSGTS GAMGKEQSFP FSNASPQTGY  240
PSTSDFSVAT APALENGSNN HTKASGTLIQ QTTQPTPSEK RPCGHNPADS SEGQPRNGRA  300
RPEVRARSQL LPRYWPRITD QELQQISGDS NSVITPLFEK MLSASDAGRI GRLVLPKKCA  360
EAYFPPISQP EGLPLKVQDL KGKEWVFQFR FWPNNNSRMY VLEGITPCIQ SMQLQAGDVV  420
TFSRIEPEGK LVMGCRKASC APSDQGNEAS NAGQGYSSNG DVAPKSNKAG EITKPGELVS  480
TNSRMKGYSA SSSCPSLNRA AAKSGSTWPE LDKRVHVAKV VEAKPAVRSK RKNSTLGLKS  540
KRLRIENEDM LELKVTWEQV QGLLRPPPNK APSVFVIEGC EIEEYEQDAP VIGRPTIPGT  600
DHQGKKIQWA QCEECSKWRK IPADALLPSK WTCSQNLWDP ERSLCSTVQE LSMEKLQDLL  660
PAISKSMNFF LFPSSHCIKN PSCF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-119	B3 family protein