PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027111616.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 465aa MW: 50571.8 Da PI: 5.2627 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.2 | 1.9e-05 | 357 | 394 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A++YIk L XP_027111616.1 357 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIDYIKFL 394 677888999*******998.....8****************98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 465 aa Download sequence |
MADEFQGEVC GGSWWNSSRS MFGSSPCSSG ILHDLGSFGW STDFLDSKAR SSDDQSGNSA 60 NSDGSIVIQD LQKPNQPESA SNLSIDSTLQ ILGIGLSSPS TTDWDRALMH GSSNGRSDQS 120 NYQPMLQEDH NSSMNYRQER GLDSCPADQI QKDWSSTLKN NFSTIVEEDS SINSFKSSGN 180 QPLNSITTTS QCTAATCAGV STSFPISSAS YGYSSTLLQT LFDTEVPQPQ QSLFGTRPMN 240 YPSTTSYQNE FSPSLPKFSP LPKLQNTNSL QLSTNPNFCN GSAAAFNDLR VNFFPSVQSQ 300 FPSSTFNEKP SLPSITTKVS NDGIRGLGSV AKKSSSEPAF KRPRIETPSP LPTFKVRKEK 360 LGDRITALQQ LVSPFGKTDT ASVLHEAIDY IKFLHDQVNV LSTPYLKNGS PIQRQQASDK 420 VKDQEGSKED LKSRGLCLVP ISSTFPVAAE TTTDFWTPTF GGTFR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G61660.3 | 4e-55 | bHLH family protein |