PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027111604.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 236aa    MW: 26666.9 Da    PI: 5.7774
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027111604.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.5e-1081126654
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       rE+ RRd++N++f+eL  ll +    + +K++K++iL  A++ + +L
  XP_027111604.1  81 AYREKMRRDKLNDRFQELSFLLDPE---RPPKVDKSAILGDATRMLIQL 126
                     579*********************9...99*************998877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MASPEEDSNW VFDFGLIEDI PVPGGDLPPL DPGFQNWSNN SFYNPNSVEL DGAFQSSQSR  60
KEASSRKRAR SGPCSATDSK AYREKMRRDK LNDRFQELSF LLDPERPPKV DKSAILGDAT  120
RMLIQLRDEA EKLKESYERL QEKVNELKAE KNELRDEKQK QKAEKDKLEH QLKALSSQTG  180
FLSNPSAILA PFVAPHQVFS SKMTPFVGYP GTSMWHFMPP AAVDTSEDHV LRPPVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.11e-56bHLH family protein