PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027111570.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 727aa    MW: 79709.4 Da    PI: 6.0574
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027111570.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.99.9e-2058113156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  XP_027111570.1  58 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELGRRLGLEPLQVKFWFQNKRTQMK 113
                     688999***********************************************998 PP
2START218.42.4e-682464661206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++elv++a+a+ep+Wv s     e + +de+++ f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW++ +     +a tl
  XP_027111570.1 246 ELAVAAMEELVRMAQAGEPLWVPSGdnstETLSEDEYVRAFPRGIGpkplgLKSEASRESAVVIMNHINLVEILMDVN-QWSNVFSsivsRALTL 339
                     57899******************9999999999**********999********************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     ev+s+g      galq+m+ae+q+++plvp R+ +fvRy++q+ +g+w++vdvS+d+ ++ +    v R++++pSg+li++++ng+skv wvehv
  XP_027111570.1 340 EVLSTGvagnynGALQVMTAEFQVPTPLVPtRENYFVRYCKQHADGTWAVVDVSLDNLRPTS----VSRCRRRPSGCLIQELPNGYSKVMWVEHV 430
                     ***********************************************************975....8**************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     + ++r +h+++r lv+sgla+gak+wvatl+rqce+
  XP_027111570.1 431 EIDDRAVHSIYRALVNSGLAFGAKRWVATLDRQCER 466
                     **********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 727 aa     Download sequence    
MFQPNMFDSH HHLLEMTHKT PENEMDMIRD DEFESKSGTD IMEAASGDDQ DPNQRPKKKR  60
YHRHTQHQIQ EMESFFKECP HPDDKQRKEL GRRLGLEPLQ VKFWFQNKRT QMKAQHERHE  120
NTQLRTENEK LRAENIRYKE ALSNATCPNC GGPAAIGEMS FDEQHLRIEN ARLREEIDRI  180
SGIAAKYVGK PMLSYPHLPP GASRSLDLGV GNYGAQSGMI GEIYGAGDLL RSVSGPTEAD  240
KPMVIELAVA AMEELVRMAQ AGEPLWVPSG DNSTETLSED EYVRAFPRGI GPKPLGLKSE  300
ASRESAVVIM NHINLVEILM DVNQWSNVFS SIVSRALTLE VLSTGVAGNY NGALQVMTAE  360
FQVPTPLVPT RENYFVRYCK QHADGTWAVV DVSLDNLRPT SVSRCRRRPS GCLIQELPNG  420
YSKVMWVEHV EIDDRAVHSI YRALVNSGLA FGAKRWVATL DRQCERLASA MANNIPAGDV  480
GVITTPEGRK SMLKLAERMV MSFCAGVGAS TAHTWTTLSG SGADDVRVMT RKSMDDPGRP  540
PGIVLSAATS FWLPVLPKRV FDFLRDENSR SEWDILSNGG LVQEMAHIAN GRDPGNSVSL  600
LRVNSANSSQ SNMLILQESS TDSTGSYVIY APVDIVAMNV VLSGGDPDYV ALLPSGFAIL  660
PDGPMNQGGG AGISEVGSGG TLLTVAFQIL VDSVPTAKLS LGSVATVNSL IKCTVERIKA  720
ALSCDKA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein