PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027111204.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 905aa MW: 102352 Da PI: 5.4619

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027111204.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.2	8.9e-14	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l XP_027111204.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	32.9	1.5e-10	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l XP_027111204.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 905 aa Download sequence
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEAGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDVRQR KRKRRGIDYN AEIPFEKKPP PGFYDVTDED RPVEQPKFPT 240 TIEELEGERR VDREARLRKQ DAARNKIAER QDAPSAIMQA NKLNDPEAVR RRSKLNLPAP 300 QIPDHELEAI AKIGIASDII GSEELTEGNA ATRALLASYA QTPQGGMTPL RTPHRTPAGK 360 QDAIMMEAEN QRRLSQSQTP LLGGDNPILH PSDFSGVTPR KKEIQTPNPL LTPSATPGGP 420 GLTPRIGMTP SKDGYSFGTT PKGTPIRDEL RINEDMEMHD SVKLRQADSR KELLSGLKNL 480 PQPKNEYQIV TQPIPEDNEE PEEKIEEDMS DRLAREKAEE EARQQALLKK RSKVLQRELP 540 RPPGASLDLI RTSLIRSDED KSSFVPPTLI EQADEMIRKE LLSLLEHDNA KYPHDEKVKK 600 EKKKGTKRKA ASVPVIEDFE ENEMKEADSL IKDEAEFLRL ALGHESASVD EFVEVHKTCL 660 DDVMYFPNRR GYGLSSVANN MEKLAALQNE FECVKKTMDD DTKKAQGLER RIKVLTDGYQ 720 MRAGKLWSQV EAIYKQMDTA ETELKCFQAL QVQEHLAASN RINTLWEEVQ KQKELESTLQ 780 KRFGDLLAQK EKIQNLLEEH RAKAQVQEEI AAENAAPELP KDEDSSIGNE TMDVDVIPEV 840 APPSSSDTNE VPEIVKEQLG EARGELSSKA FVEEDHADVS DVKPQRGMNG PVQGTEEVVD 900 ASVTA

Sequence ? help Back to Top

Protein Sequence Length: 905 aa Download sequence

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEAGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDVRQR KRKRRGIDYN AEIPFEKKPP PGFYDVTDED RPVEQPKFPT  240
TIEELEGERR VDREARLRKQ DAARNKIAER QDAPSAIMQA NKLNDPEAVR RRSKLNLPAP  300
QIPDHELEAI AKIGIASDII GSEELTEGNA ATRALLASYA QTPQGGMTPL RTPHRTPAGK  360
QDAIMMEAEN QRRLSQSQTP LLGGDNPILH PSDFSGVTPR KKEIQTPNPL LTPSATPGGP  420
GLTPRIGMTP SKDGYSFGTT PKGTPIRDEL RINEDMEMHD SVKLRQADSR KELLSGLKNL  480
PQPKNEYQIV TQPIPEDNEE PEEKIEEDMS DRLAREKAEE EARQQALLKK RSKVLQRELP  540
RPPGASLDLI RTSLIRSDED KSSFVPPTLI EQADEMIRKE LLSLLEHDNA KYPHDEKVKK  600
EKKKGTKRKA ASVPVIEDFE ENEMKEADSL IKDEAEFLRL ALGHESASVD EFVEVHKTCL  660
DDVMYFPNRR GYGLSSVANN MEKLAALQNE FECVKKTMDD DTKKAQGLER RIKVLTDGYQ  720
MRAGKLWSQV EAIYKQMDTA ETELKCFQAL QVQEHLAASN RINTLWEEVQ KQKELESTLQ  780
KRFGDLLAQK EKIQNLLEEH RAKAQVQEEI AAENAAPELP KDEDSSIGNE TMDVDVIPEV  840
APPSSSDTNE VPEIVKEQLG EARGELSSKA FVEEDHADVS DVKPQRGMNG PVQGTEEVVD  900
ASVTA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	205	KRRELKAAGIDVRQRKRKRR
2	199	205	QRKRKRR
3	200	205	RKRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein