PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027110574.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 308aa    MW: 34653 Da    PI: 9.8361
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027110574.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-14135179347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
   XP_027110574.1 135 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 179
                      8*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MKWEMEILPP ASYLSNSGWL VEESKSTKWT PAENKAFENA LAVFDKDTPD RWQKVAAVVP  60
GKTVMDVIRQ YKELVEDVSN IEAGLIPIPG YGTSPFTLEW GSGHNFDGYK QSFIATGKRS  120
SATRPSEQER KKGVPWTEEE HKLFLMGLKK YGKGDWRNIS RNFVITRTPT QVASHAQKYF  180
IRQLSGGKDK RRASIHDITT VNLSDNQIPS PDRKKSSSPD TSNVISQQQP NSTAMHKMAF  240
QWNQGNSNGA VMNFNMGHGN IFMPPHGVNS CDLKMQGQDL QRGGMHNSYV GSQNMVFQMQ  300
STHQYPHA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-106MYB_related family protein