PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027110214.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 336aa    MW: 37174.6 Da    PI: 6.6481
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027110214.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.7e-1266110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
   XP_027110214.1  66 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 110
                      789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MVSLNPNPPE GFYLDPMGMA LPNLGSFTNA PASVAVATAS TANTTSLSSE DPSKKVRKPY  60
TITKSRESWT EPEHDKFLEA LQLFDRDWKK IEAFVGSKTV IQIRSHAQKY FLKVQKSGAN  120
EHLPPPRPKR KAAHPYPQKA SKSAPALPQV SASLQDSPSS HEHGILPRAD YSNFHGNTVT  180
GAALPCWTEN AIGAGNLSRG EKGDLRWGHE LMANNYCYSS DESTPHSKTQ PTGEKINQGN  240
HGPPRVLPDF TEVYSFIGSI FDPSVTGHVQ KLKRMDPIDV ETVLLLMRNL SINLTSPDFE  300
DHRRLLSSCE LESGKEDEND KNDTVQDKCE DTCQYV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.26e-90MYB_related family protein