PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027110130.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 377aa MW: 42030.4 Da PI: 6.9593

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027110130.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.3	1.8e-29	148	209	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ g+++pr+YYrCt++ gC ++k+v+rs+edp+++e+tY+g+H+++ XP_027110130.1 148 LDDGFSWRKYGQKDILGAKHPRGYYRCTHRhvqGCLATKQVQRSDEDPTIFEVTYRGRHTCN 209 59*************************99999************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MENSADWELG NLINELMLGR ELAKQLQVRI NAPSSSPESR ELLVHKIINS YEKVLNMLKS 60 NAAVRVGERE QSTGTTIAMS ESRSRQNTGL AIGMPDSPRS LSASPHSDDS DREFRDQDSR 120 DVTRKRKAMP RWTKHVQVCP GMGLEGPLDD GFSWRKYGQK DILGAKHPRG YYRCTHRHVQ 180 GCLATKQVQR SDEDPTIFEV TYRGRHTCNQ GSEPKPPSAA AEKPETSSQG KHRQVTSQPQ 240 QNQQGILLSF QRDLKVNTKD LDSHNQHFPT FDFASTSTTK PETHPFLPSL TDNNFAGDLS 300 PPFMTPLTSG SDYFPVSPTH ISSYAENQNS YASESEFTGL ISAATSTTNS PTVGSDFPFS 360 QIGFDTNFTF DNSRFFS

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MENSADWELG NLINELMLGR ELAKQLQVRI NAPSSSPESR ELLVHKIINS YEKVLNMLKS  60
NAAVRVGERE QSTGTTIAMS ESRSRQNTGL AIGMPDSPRS LSASPHSDDS DREFRDQDSR  120
DVTRKRKAMP RWTKHVQVCP GMGLEGPLDD GFSWRKYGQK DILGAKHPRG YYRCTHRHVQ  180
GCLATKQVQR SDEDPTIFEV TYRGRHTCNQ GSEPKPPSAA AEKPETSSQG KHRQVTSQPQ  240
QNQQGILLSF QRDLKVNTKD LDSHNQHFPT FDFASTSTTK PETHPFLPSL TDNNFAGDLS  300
PPFMTPLTSG SDYFPVSPTH ISSYAENQNS YASESEFTGL ISAATSTTNS PTVGSDFPFS  360
QIGFDTNFTF DNSRFFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11070.1	6e-54	WRKY family protein