PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027109743.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | LBD | ||||||||
Protein Properties | Length: 251aa MW: 27231.3 Da PI: 4.9193 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.2 | 7.5e-40 | 48 | 149 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll +lpe++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+ael XP_027109743.1 48 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHLPENRRNDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAEL 142 7***********************9989******************************************************************* PP DUF260 95 allkeel 101 a+++++l XP_027109743.1 143 AVVQTQL 149 **99885 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence |
MNDQSKSDQG MLDSGRRKGS SEKRASSLIE ATEDAVLNVG VSPPPSAPCG ACKFLRRKCI 60 SGCIFAPHFG SDQGAARFAA VHKVFGASNV SKLLLHLPEN RRNDAVVTIS YEAQARLSDP 120 VYGCVSTILA LQQQVASLQA ELAVVQTQLM NSRLAMANAL RDSQAIQQQQ IVALQPAYSN 180 TSAASNTLMN INSFNSNFDL VGEAEAAPSN SFDPVHLSQV PQEVEEEDEE ESQNHLDFTS 240 QIFHQDNKTF F |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 6e-61 | LBD family protein |