PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027109730.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 235aa MW: 26266 Da PI: 8.8036

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027109730.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.4	2.6e-32	153	211	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s++prsYYrC++++C+vkk+v+r ++d+++v++tYeg Hnh+ XP_027109730.1 153 LDDGYRWRKYGQKSVKNSKYPRSYYRCSHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 211 59********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence
MNLRSSPLLF MEGQDQETPP LPLPVPSPPT NPSFLFAQPH LPSPNSSLIF PNISHSQPLV 60 LQDNLHDLVG LFSAPPPTPS GIPNIAHDNT NDQIMMPSLE TAPLTISDNA VAPSPEEVAI 120 KDKIRRAASS SSKNRKNAVP KVVFQTRSPD DILDDGYRWR KYGQKSVKNS KYPRSYYRCS 180 HHTCNVKKQV QRLSKDTSIV VTTYEGIHNH PCEKLMETLS PLLEQIQFLT RPVLM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64000.1	1e-54	WRKY family protein