PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027109337.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 412aa MW: 48852.4 Da PI: 8.4362

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027109337.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48	4e-15	11	99	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 kfYn+Y ++ Fs+rk++ +k +++ +t+r++ C k+ + + + + + ++ ra t++gC ak+ + ++ + k++v++++l+ nH+l+ XP_027109337.1 11 KFYNKYVFKMDFSIRKDYLNKD-KETVTTSRRYSCCKKCVKLNYEGD-VMPKKIRALTKIGCGAKMIIVLHGeTMKYRVHDFVLNYNHKLQ 99 6******************9.555699*****999999888.9999************999989*************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MEFNSEKDAY KFYNKYVFKM DFSIRKDYLN KDKETVTTSR RYSCCKKCVK LNYEGDVMPK 60 KIRALTKIGC GAKMIIVLHG ETMKYRVHDF VLNYNHKLQI VQYSHMMPSQ RKVSEVQGFQ 120 TEISEDARLL LKQSHELIGK EAGMLIDYNF FGDVVTFDTT YKTNKEYRPL GVFVGFNQHR 180 QIVIFSAALM YDETIDSFKW VFGTFLEVMC GKHPNTILTD QDHAMATTHL LVMPQTFHGL 240 YTFHIKRNFM KHLDNHYKEN SDVPYIFGAC MYEIEEVKQF NRVWEAMMKK HNLEDNEWLS 300 GLYRICDKWT RCMMKENLTT GMRSTQLSES LNAAIKNYLK LDHDLVQFFR HFNRVVDEKR 360 NNELTAEYEM RQKLPMIRLR QTPILMHASE TYSPTIFVTF QNEYCESTAM VI

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MEFNSEKDAY KFYNKYVFKM DFSIRKDYLN KDKETVTTSR RYSCCKKCVK LNYEGDVMPK  60
KIRALTKIGC GAKMIIVLHG ETMKYRVHDF VLNYNHKLQI VQYSHMMPSQ RKVSEVQGFQ  120
TEISEDARLL LKQSHELIGK EAGMLIDYNF FGDVVTFDTT YKTNKEYRPL GVFVGFNQHR  180
QIVIFSAALM YDETIDSFKW VFGTFLEVMC GKHPNTILTD QDHAMATTHL LVMPQTFHGL  240
YTFHIKRNFM KHLDNHYKEN SDVPYIFGAC MYEIEEVKQF NRVWEAMMKK HNLEDNEWLS  300
GLYRICDKWT RCMMKENLTT GMRSTQLSES LNAAIKNYLK LDHDLVQFFR HFNRVVDEKR  360
NNELTAEYEM RQKLPMIRLR QTPILMHASE TYSPTIFVTF QNEYCESTAM VI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-47	FAR1 family protein