PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027108898.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 488aa MW: 54091.9 Da PI: 6.5388

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027108898.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	83	99	3	19
ETTTTEEESSHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrH 19 C++Cgk F ++ ++ H XP_027108898.1 83 CENCGKEFASWKSFLEH 99 **************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MDCTEDQPPK FKHYCRICKK GFMCGRALGG HMRAHGIGDE GGSLDDDDVA SDWEDKFGGA 60 DRTCRRMYQL RTNPNRLKSC RICENCGKEF ASWKSFLEHG KCSSDDAESL VSSPGSDGEY 120 EGERKGCQWS KRKRSLRTKV GSFGSAYPSS EDEDLLLARC LVDLANARFE VEPEESCASA 180 SKEEERRINP VTAYFNTPLI ASRVPLDKPK GASKGLFECK ACKKVFNSHQ ALGGHRASHK 240 KVKGCFAAKQ DQQDDSSLAD DDVTIHDEFF PSKSPSSLQF EQGPTMAGAS RRKSKVHECT 300 ICHRVFSTGQ ALGGHKRCHW ITSNSQETSS LVKLQFNHDH MDHQILHQGP PLINKSETLD 360 LNIPATQGDH ELLGILRPQN PLSFEVSTDI RLHTWTPNLG AETKCDSQNC HHQNDDDQGN 420 ENDRHNDSNI NKNNINCSNG PIENADDEAD SKVELAKLSD LKDINLSGNS SQWLQVGIGS 480 TARVNTNP

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MDCTEDQPPK FKHYCRICKK GFMCGRALGG HMRAHGIGDE GGSLDDDDVA SDWEDKFGGA  60
DRTCRRMYQL RTNPNRLKSC RICENCGKEF ASWKSFLEHG KCSSDDAESL VSSPGSDGEY  120
EGERKGCQWS KRKRSLRTKV GSFGSAYPSS EDEDLLLARC LVDLANARFE VEPEESCASA  180
SKEEERRINP VTAYFNTPLI ASRVPLDKPK GASKGLFECK ACKKVFNSHQ ALGGHRASHK  240
KVKGCFAAKQ DQQDDSSLAD DDVTIHDEFF PSKSPSSLQF EQGPTMAGAS RRKSKVHECT  300
ICHRVFSTGQ ALGGHKRCHW ITSNSQETSS LVKLQFNHDH MDHQILHQGP PLINKSETLD  360
LNIPATQGDH ELLGILRPQN PLSFEVSTDI RLHTWTPNLG AETKCDSQNC HHQNDDDQGN  420
ENDRHNDSNI NKNNINCSNG PIENADDEAD SKVELAKLSD LKDINLSGNS SQWLQVGIGS  480
TARVNTNP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	1e-26	C2H2 family protein