PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027108891.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 266aa MW: 30450.1 Da PI: 7.8628 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.6 | 9e-16 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv +v+ +G ++W+ I++ g++Rt+k+c++rw +yl XP_027108891.1 8 KGPWTEQEDVQLVLCVNVYGDRRWDFISKVSGLKRTGKSCRLRWVNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 6e-17 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++ XP_027108891.1 61 RGKMTPHEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 106 89********************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence |
MVQEEIRKGP WTEQEDVQLV LCVNVYGDRR WDFISKVSGL KRTGKSCRLR WVNYLHPGLK 60 RGKMTPHEER LVLELHSKWG NRWSRIARKL PGRTDNEIKN YWRTHMRKKA QERKKAAISP 120 SSSSSSSSPS FSNCSSSISN GNSPSMESGP ITETKERSFY DTGGLEMLTA KGNKTGQAEE 180 ERLQKVYSMD EIWKDIEFSD SDAIQPVYDG YGEGGCNFSS QTMASPVRDY CPVSLWMMDE 240 DESKMFPPIS DQFYSFYNQE STILTG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 3e-84 | MYB family protein |