PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027108891.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 266aa    MW: 30450.1 Da    PI: 7.8628
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027108891.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69e-16855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +lv +v+ +G ++W+ I++  g++Rt+k+c++rw +yl
   XP_027108891.1  8 KGPWTEQEDVQLVLCVNVYGDRRWDFISKVSGLKRTGKSCRLRWVNYL 55
                     79********************************************97 PP

2Myb_DNA-binding53.46e-1761106148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+ E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
   XP_027108891.1  61 RGKMTPHEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 106
                      89********************.*********.************986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MVQEEIRKGP WTEQEDVQLV LCVNVYGDRR WDFISKVSGL KRTGKSCRLR WVNYLHPGLK  60
RGKMTPHEER LVLELHSKWG NRWSRIARKL PGRTDNEIKN YWRTHMRKKA QERKKAAISP  120
SSSSSSSSPS FSNCSSSISN GNSPSMESGP ITETKERSFY DTGGLEMLTA KGNKTGQAEE  180
ERLQKVYSMD EIWKDIEFSD SDAIQPVYDG YGEGGCNFSS QTMASPVRDY CPVSLWMMDE  240
DESKMFPPIS DQFYSFYNQE STILTG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.33e-84MYB family protein