PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027108145.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ARF

Protein Properties

Length: 449aa MW: 49694.8 Da PI: 7.2365

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027108145.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.9	9.4e-24	174	275	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + ++ XP_027108145.1 174 FCKTLTASDTSTHGGFSVPRRAAEDCfpplnyE-EPRPSQELVARDIHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGEG 265 99**************************954.445678*********************************************..4489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 + l+++++r+ XP_027108145.1 266 GDLRLGIRRA 275 999**997 PP
2	Auxin_resp	102.3	6.3e-34	300	381	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+s++++F+++Y+ ras+++F+v+++k++k++++++ vG+Rfk++++ ++++ rr+sG+v+gv d+dp rWpnSkWr+L XP_027108145.1 300 VANAVSSNTAFKIFYSTRASHADFIVPYQKYVKSINNQIPVGTRFKISIDLDNAPDRRYSGVVTGVGDVDPHRWPNSKWRCL 381 689******************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence
MEIDLNHAIV ESSEVEKNAN ACSCNGECDK GGCGFGCVYC SLSTSTSSCS SNASSSNPPP 60 PSKIFMELWY ACAGPVTSLP KKGNVVVYXP QGHLEQAASV SSFPALEVSS FDLQPQIFCK 120 VLEVELLANK ENDEVYTQLT LLPISEVLAL RSGGKDHEEA GTEEVPIKST SHMFCKTLTA 180 SDTSTHGGFS VPRRAAEDCF PPLNYEEPRP SQELVARDIH GVEWRFRHIY RGQPRRHLLT 240 TGWSIFVSQK NLVSGDAVLF LRGEGGDLRL GIRRASGLRN GLSELVIKSQ NAYPRVLAPV 300 ANAVSSNTAF KIFYSTRASH ADFIVPYQKY VKSINNQIPV GTRFKISIDL DNAPDRRYSG 360 VVTGVGDVDP HRWPNSKWRC LMVRWEEDAS NRHERVSPWE IDFSASFANM TIQTSPRMKK 420 LRTCMQADVQ NSSRNGADLL STDAIYQQR

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence

MEIDLNHAIV ESSEVEKNAN ACSCNGECDK GGCGFGCVYC SLSTSTSSCS SNASSSNPPP  60
PSKIFMELWY ACAGPVTSLP KKGNVVVYXP QGHLEQAASV SSFPALEVSS FDLQPQIFCK  120
VLEVELLANK ENDEVYTQLT LLPISEVLAL RSGGKDHEEA GTEEVPIKST SHMFCKTLTA  180
SDTSTHGGFS VPRRAAEDCF PPLNYEEPRP SQELVARDIH GVEWRFRHIY RGQPRRHLLT  240
TGWSIFVSQK NLVSGDAVLF LRGEGGDLRL GIRRASGLRN GLSELVIKSQ NAYPRVLAPV  300
ANAVSSNTAF KIFYSTRASH ADFIVPYQKY VKSINNQIPV GTRFKISIDL DNAPDRRYSG  360
VVTGVGDVDP HRWPNSKWRC LMVRWEEDAS NRHERVSPWE IDFSASFANM TIQTSPRMKK  420
LRTCMQADVQ NSSRNGADLL STDAIYQQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60450.1	1e-172	ARF family protein