PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027108072.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 719aa MW: 76653.8 Da PI: 6.4206

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027108072.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50	5.5e-16	448	494	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq XP_027108072.1 448 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 494 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 719 aa Download sequence
MPLSEFLRMA RGKLESAQPK TASPADLSPA TENDLVELLW ENGQILMQGQ SNRVKKSPNL 60 NDFPSQEPGI RDRFTGNVST SKVGKFVEIG STLNDAMPSV RSGETYLNQE DEMGPWLNYP 120 VDDGFRSDFC SEILPEISGV TGNEPSTLNS FGSVVKGSCN QVPQHSYTVP VHNGLDIEAR 180 NASKVSSSRT GLLSPYSSQQ CQLSVAPAGS GVSSVVMNTT SNNPVTFFGD TVQGQASSGG 240 LVSMKMQNQK VASNFLNFTH FSRPAALVRA NLERTDGVAA SCSSGIEKVS AVSSTSPVKS 300 THKPSSNSQK DICVHSQPKL VSTKVDSRPS FDKPPEESCS AQRPDNLHWD DSIKNDKSSS 360 PIISSSITKE VKDGENPVEP VVAASSVCSA NSGEGASNDQ MHTLKRKHCD NEESESRSED 420 IEEESVGIKK VAHARGVSGS KRSRAAEVHN LSERRRRDRI NEKMRALQEL IPNCNKADKA 480 SMLDEAIEYL KTLQLQVQVM SMGAGLCMPP MMFPTGLQHM HPAHVPHFPP MAGGMGLGMG 540 YGMGMLDLNS GSPRFPIFPV PPMQGAHFPS PTISGSSGFQ GLAGSNLQVF GHPGQGGPMS 600 IPRAPLVPLV GQAPISSAVG VDTSRMGIHV EASNASPTLN SVVEVQNKNS QLNHKTDTGS 660 SISQTSSQLQ ATSKEFDQSA MTSKDDQAPD VCAAASVNMA STTDLVCDKE KGSNGMCKE

Sequence ? help Back to Top

Protein Sequence Length: 719 aa Download sequence

MPLSEFLRMA RGKLESAQPK TASPADLSPA TENDLVELLW ENGQILMQGQ SNRVKKSPNL  60
NDFPSQEPGI RDRFTGNVST SKVGKFVEIG STLNDAMPSV RSGETYLNQE DEMGPWLNYP  120
VDDGFRSDFC SEILPEISGV TGNEPSTLNS FGSVVKGSCN QVPQHSYTVP VHNGLDIEAR  180
NASKVSSSRT GLLSPYSSQQ CQLSVAPAGS GVSSVVMNTT SNNPVTFFGD TVQGQASSGG  240
LVSMKMQNQK VASNFLNFTH FSRPAALVRA NLERTDGVAA SCSSGIEKVS AVSSTSPVKS  300
THKPSSNSQK DICVHSQPKL VSTKVDSRPS FDKPPEESCS AQRPDNLHWD DSIKNDKSSS  360
PIISSSITKE VKDGENPVEP VVAASSVCSA NSGEGASNDQ MHTLKRKHCD NEESESRSED  420
IEEESVGIKK VAHARGVSGS KRSRAAEVHN LSERRRRDRI NEKMRALQEL IPNCNKADKA  480
SMLDEAIEYL KTLQLQVQVM SMGAGLCMPP MMFPTGLQHM HPAHVPHFPP MAGGMGLGMG  540
YGMGMLDLNS GSPRFPIFPV PPMQGAHFPS PTISGSSGFQ GLAGSNLQVF GHPGQGGPMS  600
IPRAPLVPLV GQAPISSAVG VDTSRMGIHV EASNASPTLN SVVEVQNKNS QLNHKTDTGS  660
SISQTSSQLQ ATSKEFDQSA MTSKDDQAPD VCAAASVNMA STTDLVCDKE KGSNGMCKE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	453	458	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	8e-40	bHLH family protein