PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027107948.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TALE

Protein Properties

Length: 321aa MW: 35878.2 Da PI: 4.8802

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027107948.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.1	1.7e-09	250	282	23	55
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++ee+ +L++ +gL+++q+ +WF N+R ++ XP_027107948.1 250 PYPTEEEKNKLSEATGLDQKQINNWFINQRKRH 282 8*****************************885 PP
2	ELK	38.8	2e-13	202	223	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++L+rKYsgyL+sL++EF+ XP_027107948.1 202 ELKEMLMRKYSGYLSSLRKEFL 223 9********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MDELYRIHTS FSCPDGGAVE VGSMRGLDRS SPVENLVQFR PGENSHDEVI GSEMSDLLKI 60 QIASHHLYPN LVSAYVECRK VGAPPEMASL LEEISKASRP ISSPSGISAD PELDQFMESY 120 CEALHRYKEE LLKPFDEATT FLSNIELELN NLCKENFTTT TSSSMTSTNY YSGVTSDEDL 180 SCGEVEVAES QESSAAGQGE SELKEMLMRK YSGYLSSLRK EFLKKRKKGK LPKDARIALL 240 DWWNTHYRWP YPTEEEKNKL SEATGLDQKQ INNWFINQRK RHWKPSEDMR FALMQGVSAG 300 TPSPGGPICF DTAGGNGGFG I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	218	227	LRKEFLKKRK
2	224	228	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.1	5e-69	TALE family protein