PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027107812.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family LBD
Protein Properties Length: 201aa    MW: 21614.8 Da    PI: 8.1595
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027107812.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601253.6e-39111111100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC k+C++apyf  eq +++fa+vhk+FGasn +k+l ++p ++r da+ +l+yeA ar+rdPvyG+vg++++lqqq+ +l+ael
  XP_027107812.1  11 PCGACKFLRRKCLKGCIFAPYFDPEQgTAHFAAVHKVFGASNASKMLLRVPAHKRLDAVVTLCYEALARIRDPVYGCVGHLFTLQQQVVNLQAEL 105
                     7*********************666659******************************************************************* PP

          DUF260  95 allkee 100
                     a ++++
  XP_027107812.1 106 ACAQAR 111
                     *99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    
MSGTGHNGSG PCGACKFLRR KCLKGCIFAP YFDPEQGTAH FAAVHKVFGA SNASKMLLRV  60
PAHKRLDAVV TLCYEALARI RDPVYGCVGH LFTLQQQVVN LQAELACAQA RLSTLQRLPS  120
MLPPPAQGPS PGNFQSCTAN ASSIHNLEPP LPSEQTSMDM EGFSNPVNDR DLGGGDDLHA  180
FAQGFVSRYL PEVKFKPCTS P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.18e-72LBD family protein