PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027107679.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HB-other

Protein Properties

Length: 507aa MW: 56654.1 Da PI: 7.8286

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027107679.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.6	4.4e-18	3	58	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+e+Le+l+ +++yp+++ +ee Ak++gLte+qV+ WF+ rR k+k+ XP_027107679.1 3 KKRIVKTRAQVEALEKLYDEHKYPTEALKEEFAKSVGLTEKQVSGWFCHRRLKDKR 58 89****************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence
MNKKRIVKTR AQVEALEKLY DEHKYPTEAL KEEFAKSVGL TEKQVSGWFC HRRLKDKRLA 60 NPEAYANGRQ DRSSGILQDR GSGLRQDSCG STKQGDDRNY DPREVESRRL VGQEYSAADL 120 TYELGSHYTG NHGSADDTSS GSSSSLRNMS FPQDRDRFAL ANSRYQAQSL PMDIKEVKPR 180 TGPSGYLKVK GQVENAAITA VKRQLGRHYW ADGPPLGVEF DPLPPGAFES SIQEPPNDST 240 KMTESYYAEE AVLPRSPENS MVHKNSNLGS GSQYNPKASS HDSDMERTRF KMAHGPDRSE 300 NCFPPKYKQK SPLHNHGDFY AGRSSSMDIH EGSARKTRVY DSQDPDRKAK YGDGGMSLDS 360 FSGHRHSRLH NPRVDSDHAD PWLQNYNDMN SNVAPAEHFV SKSSNLASKG VEYDDFTHKG 420 LSKRLAKEAK SSGERLTLNG NFDPVQPKNG LTSAKRVRNE LPQEHYSKKT SWSEVPPWTN 480 QASRSAAEMP TSFSEDDETA DTSSSVD

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence

MNKKRIVKTR AQVEALEKLY DEHKYPTEAL KEEFAKSVGL TEKQVSGWFC HRRLKDKRLA  60
NPEAYANGRQ DRSSGILQDR GSGLRQDSCG STKQGDDRNY DPREVESRRL VGQEYSAADL  120
TYELGSHYTG NHGSADDTSS GSSSSLRNMS FPQDRDRFAL ANSRYQAQSL PMDIKEVKPR  180
TGPSGYLKVK GQVENAAITA VKRQLGRHYW ADGPPLGVEF DPLPPGAFES SIQEPPNDST  240
KMTESYYAEE AVLPRSPENS MVHKNSNLGS GSQYNPKASS HDSDMERTRF KMAHGPDRSE  300
NCFPPKYKQK SPLHNHGDFY AGRSSSMDIH EGSARKTRVY DSQDPDRKAK YGDGGMSLDS  360
FSGHRHSRLH NPRVDSDHAD PWLQNYNDMN SNVAPAEHFV SKSSNLASKG VEYDDFTHKG  420
LSKRLAKEAK SSGERLTLNG NFDPVQPKNG LTSAKRVRNE LPQEHYSKKT SWSEVPPWTN  480
QASRSAAEMP TSFSEDDETA DTSSSVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	3e-68	HB-other family protein