PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027107222.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

NF-X1

Protein Properties

Length: 1122aa MW: 121496 Da PI: 8.2063

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027107222.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	24.3	6.5e-08	309	326	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H+C+++CH GpC+pC XP_027107222.1 309 CGRHRCERTCHVGPCDPC 326 ****************** PP
2	zf-NF-X1	16.8	1.5e-05	637	652	1	16
zf-NF-X1 1 CGkHkCqklCHeGpCp 16 CG H C ++CH+ pC+ XP_027107222.1 637 CGLHACARTCHPSPCD 652 ***************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 1122 aa Download sequence
MSFPVQRNRR DNRSRNRTTS PVQGARREWV LRGPAPIATT AAPTPTTAAI PPTNYSPAVA 60 ADDVIRNGNN GDQNGRSVPP ANRTRSTSGA RCIMRQHSNQ RRERDKEKQR DHSREVKGSK 120 DLNLPLLVQE IQDKLMKGSV ECMICYDMVR RSAPIWSCSS CYSIFHLACI KKWARAPTSV 180 DLSAEKGQGC NWRCPGCQAV QLMSSKEIRY VCFCGKRQDP PPDLYLTPHS CGEPCGKALE 240 KEVPGSGMAK EDLCPHLCVL QCHPGPCPPC KAFAPARWCP CGKQVITTRC SDRKSVLTCG 300 QRCDKLLDCG RHRCERTCHV GPCDPCDVLV NASCFCKKKI EVVLCGDMVV KGEIRADDGV 360 FSCSSICEKK LGCRNHFCDD ICHPGPCGEC DLLPSKIKTC CCGKMRLKED RESCLDPIST 420 CSQTCGKSLP CGVHHCKEMC HTGVCAPCPV LVTQKCRCGS TSRTVECYRT TAENENFTCD 480 RPCGQKKNCG RHRCSERCCP LSNPNKSFSG DWDPHLCSMP CGKKLRCRQH SCHSFCHSGH 540 CPPCLDTIFT DLTCTCGRTS IPPPLPCGTP PPSCQYPCSV PQPCGHPSTH SCHLGDCPPC 600 TIPIAKECIG GHVVLRNIPC GSKDIRCNKL CGKTRQCGLH ACARTCHPSP CDTPSGTSIG 660 SRASCGQPCG APRRDCRHTC TALCHPTGSC PDVRCEFPVS ITCSCGRINA TVPCDAGGSG 720 GGYSSDTVLE ASIVQKLPAP LQPVEGNVKV PLGQRKLMCD DECAKTERKK VLADAFGVTT 780 PNLDALHFGE NAVVSEVLSD LLRREPKWVL SVEERCKYLV LGRGRGGINA VKVHVFCPMS 840 KEKRDIVRLI AERWKLSVNA AGWEPKRFIV LHVTPKSKAP ARILGLKGCL ASNMLQPPVF 900 DPLVDMDPRL VVALFDLPRD ADISALVLRF GGECELVWLN DKNALAVFSD PARAATAMRR 960 LDQGSLYYGA VVVPHHGGAS ATAVAAAAAA NAWGATGPSK DGGAVTALKT NPWKKAVMQE 1020 PDGRESSWGA EDWSDNSVDV HSSIRKGNEV PISATNRWSV LDSENSSSTS SGRNDDSRNK 1080 PGTPLVSSVK PSSSSSVLPG QPQGAGINEI SDVVDDWEKA YD

Sequence ? help Back to Top

Protein Sequence Length: 1122 aa Download sequence

MSFPVQRNRR DNRSRNRTTS PVQGARREWV LRGPAPIATT AAPTPTTAAI PPTNYSPAVA  60
ADDVIRNGNN GDQNGRSVPP ANRTRSTSGA RCIMRQHSNQ RRERDKEKQR DHSREVKGSK  120
DLNLPLLVQE IQDKLMKGSV ECMICYDMVR RSAPIWSCSS CYSIFHLACI KKWARAPTSV  180
DLSAEKGQGC NWRCPGCQAV QLMSSKEIRY VCFCGKRQDP PPDLYLTPHS CGEPCGKALE  240
KEVPGSGMAK EDLCPHLCVL QCHPGPCPPC KAFAPARWCP CGKQVITTRC SDRKSVLTCG  300
QRCDKLLDCG RHRCERTCHV GPCDPCDVLV NASCFCKKKI EVVLCGDMVV KGEIRADDGV  360
FSCSSICEKK LGCRNHFCDD ICHPGPCGEC DLLPSKIKTC CCGKMRLKED RESCLDPIST  420
CSQTCGKSLP CGVHHCKEMC HTGVCAPCPV LVTQKCRCGS TSRTVECYRT TAENENFTCD  480
RPCGQKKNCG RHRCSERCCP LSNPNKSFSG DWDPHLCSMP CGKKLRCRQH SCHSFCHSGH  540
CPPCLDTIFT DLTCTCGRTS IPPPLPCGTP PPSCQYPCSV PQPCGHPSTH SCHLGDCPPC  600
TIPIAKECIG GHVVLRNIPC GSKDIRCNKL CGKTRQCGLH ACARTCHPSP CDTPSGTSIG  660
SRASCGQPCG APRRDCRHTC TALCHPTGSC PDVRCEFPVS ITCSCGRINA TVPCDAGGSG  720
GGYSSDTVLE ASIVQKLPAP LQPVEGNVKV PLGQRKLMCD DECAKTERKK VLADAFGVTT  780
PNLDALHFGE NAVVSEVLSD LLRREPKWVL SVEERCKYLV LGRGRGGINA VKVHVFCPMS  840
KEKRDIVRLI AERWKLSVNA AGWEPKRFIV LHVTPKSKAP ARILGLKGCL ASNMLQPPVF  900
DPLVDMDPRL VVALFDLPRD ADISALVLRF GGECELVWLN DKNALAVFSD PARAATAMRR  960
LDQGSLYYGA VVVPHHGGAS ATAVAAAAAA NAWGATGPSK DGGAVTALKT NPWKKAVMQE  1020
PDGRESSWGA EDWSDNSVDV HSSIRKGNEV PISATNRWSV LDSENSSSTS SGRNDDSRNK  1080
PGTPLVSSVK PSSSSSVLPG QPQGAGINEI SDVVDDWEKA YD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	109	RRERDKEKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	0.0	NF-X1 family protein