PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027106882.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 277aa MW: 31679.4 Da PI: 8.6964

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027106882.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.9	3.8e-13	96	147	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++++h +ErrRR+++ + ++ Lr llP + +++K s ++ L Av++Ik++ XP_027106882.1 96 KKANHRDIERRRRQEMAKLYASLRNLLPLeC---KKTKRSISDHLLDAVNHIKHM 147 689************************88...******************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
MDDFTYNLIP LLQDDPMLFE YLPISTVHPD LEPAIPHQDL QNQVVASSLA SRQEKTEEII 60 IRNNINTARK RQTKASSAIR ADNHDRGKNP DESKQKKANH RDIERRRRQE MAKLYASLRN 120 LLPLECKKTK RSISDHLLDA VNHIKHMKKN IRELEVKRDK QINLTAGSSN LDVKIVEETN 180 SSAIKFTLRQ CSGGGIEILM KNYLADTKWF PLSKILDVLL DEGLAVVSCV CTKVNEEFLY 240 TIQTEVNAGV DLICLQEKLT KNAMTGKDLK VLEQYRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	2e-34	bHLH family protein