PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027106490.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 814aa    MW: 87873.9 Da    PI: 6.3575
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027106490.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS334.32.3e-1024558132374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfs 94 
                     +++L+++Ae v++g+  laq +Larl+++ sp g+p+qR+a+y +eAL+  l+       + l+p +++++    + ++ a+k fse+sP+++f+
  XP_027106490.1 455 IDQLYKAAELVQTGNPLLAQGILARLNHQLSPIGKPFQRAAFYCKEALQLLLHT------NNLNPCTANSSPfsLIFKIGAYKSFSEISPVVQFA 543
                     689**************************************************9......344333333333349******************** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     ++t+ qa+le +eg +r+HiiDfdi++G+QW++++q+La R++g+pslRiT+++sp+++++ el  ++e+L +fA+e+++ fef+++  ++l++ 
  XP_027106490.1 544 NFTCIQALLEVLEGFDRIHIIDFDIGYGGQWASFMQELALRSGGAPSLRITAFASPSTHDQLELGLMRENLMHFASEINMAFEFEIVSIDSLNSA 638
                     **************************************************************************************988888888 PP

            GRAS 190 ele.eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     + +  L+v+++Ea+aVnl ++ ++    +++l    + +L++vk+lsPk+vv v++ +++++ +F +++++al+ ys l++sl+a    + +  +
  XP_027106490.1 639 SWSlPLHVSENEAIAVNLPVSSFSSC--QLPL----SLILRFVKQLSPKIVVSVDRGCNRTDLPFPNHVIHALQSYSNLLESLDAV-NVNLDSLQ 726
                     6653589*************888887..4444....45*********************************************665.34668889 PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     k+Er+ll++ i+ ++  +  +     e+ ++Wr  + ++GF+p+++s+++++qa++++++++++g++ve+++ +lvl+W++++L+s+SaWr
  XP_027106490.1 727 KIERFLLQPGIERILLGRYHS----PEKTQHWRTLFLSSGFSPLTFSNFTESQAECVVKRTPVRGFHVEKRQSALVLCWQRKELISASAWR 813
                     ****************99998....9****************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 814 aa     Download sequence    
MKGMPLPFDF QGKGVLDLDL QFVSSSSSSS SSSFWNYKNA SNCKANCLLN RNTSISSDSE  60
PTSVLDNIRS QSPPTSSSTL SSSLGGGGGG GPNKNSGGAV AGGGGGASTD TTGVAAVSGN  120
SSIKWHQDAP STTTSSNVAA ESELQPVPPS LEMGGGGTTA AEEWESVLPE SVAASPSQEQ  180
SILRWIMGDV DDPSMANLNK VLQIGGGPAA ADDEFNPGFG VVDQGFGADP VGQVTNFLPP  240
MNPSLPMASS ASLSSNRVNG EKIGLLANSS GSPAVNKLSN PQNSIFPALS SNLGVPIAFN  300
QGQQHVIQQT PTAAFECAEM KPPIFNPQML INQHQAQHPQ NPSFFMPLAY GQQEQNLLMP  360
PQSKRHNPGH IGGTDPGFQI SKAPFSDTGQ ELFAGRQQPH QQQQAMPQGL SHQLQLLPHY  420
LQQRPAATSP KQKMIGDEMG HSHQQQQQQQ QQAIIDQLYK AAELVQTGNP LLAQGILARL  480
NHQLSPIGKP FQRAAFYCKE ALQLLLHTNN LNPCTANSSP FSLIFKIGAY KSFSEISPVV  540
QFANFTCIQA LLEVLEGFDR IHIIDFDIGY GGQWASFMQE LALRSGGAPS LRITAFASPS  600
THDQLELGLM RENLMHFASE INMAFEFEIV SIDSLNSASW SLPLHVSENE AIAVNLPVSS  660
FSSCQLPLSL ILRFVKQLSP KIVVSVDRGC NRTDLPFPNH VIHALQSYSN LLESLDAVNV  720
NLDSLQKIER FLLQPGIERI LLGRYHSPEK TQHWRTLFLS SGFSPLTFSN FTESQAECVV  780
KRTPVRGFHV EKRQSALVLC WQRKELISAS AWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-147GRAS family protein