PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027106174.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GATA
Protein Properties Length: 368aa    MW: 40456.9 Da    PI: 5.2264
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027106174.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.41.2e-15208244135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  XP_027106174.1 208 CQHCGVSEksTPAMRRGPGGPRTLCNACGLMWANKGT 244
                     **********************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    
MASTMNGRRR HKRPYKDRYV NVPFQVDEDG SAGGFDADDI GAVDERINSG AREMRAVNSM  60
PIATILTSPG GAPMASRTSE LTISFEGEVY VFPAVPPEKA VLLLLGGRDV PRSIRSSEFL  120
LQQNCKTTDD GSSQPNVSRR IASLVRFREK RKERCFEKKI RYTCRKEVAQ RMHRKNGQFA  180
SLKDAGKAAE NWESGEVTPH QEHVSRRCQH CGVSEKSTPA MRRGPGGPRT LCNACGLMWA  240
NKGTLRDLTK GGRSAYFDQS DPETPEMKAS SMEPENSYHN QDEEGSSEDA KPMFVESGCP  300
SLGPNAQDLL ETAQGLSGDS PVGLGNSSIN LDEQQETLDE LANASGTEFE IPSNFDEQVW  360
LSSNADLE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.29e-51GATA family protein