PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027105893.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 433aa MW: 47825.8 Da PI: 6.3296

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027105893.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102	3.8e-32	287	342	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a+++LGG + AtPk+i+elm+v+gLt+++vkSHLQkYRl+ XP_027105893.1 287 KQRRCWSPELHRRFVDALQKLGGCQAATPKQIRELMQVDGLTNDEVKSHLQKYRLH 342 79****************************************************97 PP
2	Myb_DNA-binding	46.8	6.6e-15	289	340	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r W++e++ ++vda ++lGg t+k I + m+ g+t ++ks++qky+ XP_027105893.1 289 RRCWSPELHRRFVDALQKLGGCqaaTPKQIRELMQvDGLTNDEVKSHLQKYR 340 568************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MGSIPPELSL DFRPPSTGTV TTTTVTAAAS EEQSCCYVPK TIDELVGQVS MIGNVAEKLL 60 KLDDYVTKLE DEMKKIDAFK RELPLCMLLL NDAIRTLKEE STKYTTMDAG PVLEEFIPLK 120 KNCDEDEKSE MVVETSKKDK DSREKMSWMS SVQLWNSDNP ASKSDFDINE AHSKPETKKR 180 VVEAEIQEDL FESCKNGSVA RAFVPFQGCS SLPVMITRKE NEYELPGVVP GLSLQTPGTK 240 KLKEDIGSGG LNSRVGGSRA VSCSVSSVQS NVRAAVSQQQ QQQTSRKQRR CWSPELHRRF 300 VDALQKLGGC QAATPKQIRE LMQVDGLTND EVKSHLQKYR LHTRRLPTTT GTSTNQPVVV 360 LGALWLPQDQ QHGESSKQSN SHSGSPQGPL QLGGASRGTS MTGGDSMEDE EDDKSESHSC 420 WKSHIRTSQR TNV

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MGSIPPELSL DFRPPSTGTV TTTTVTAAAS EEQSCCYVPK TIDELVGQVS MIGNVAEKLL  60
KLDDYVTKLE DEMKKIDAFK RELPLCMLLL NDAIRTLKEE STKYTTMDAG PVLEEFIPLK  120
KNCDEDEKSE MVVETSKKDK DSREKMSWMS SVQLWNSDNP ASKSDFDINE AHSKPETKKR  180
VVEAEIQEDL FESCKNGSVA RAFVPFQGCS SLPVMITRKE NEYELPGVVP GLSLQTPGTK  240
KLKEDIGSGG LNSRVGGSRA VSCSVSSVQS NVRAAVSQQQ QQQTSRKQRR CWSPELHRRF  300
VDALQKLGGC QAATPKQIRE LMQVDGLTND EVKSHLQKYR LHTRRLPTTT GTSTNQPVVV  360
LGALWLPQDQ QHGESSKQSN SHSGSPQGPL QLGGASRGTS MTGGDSMEDE EDDKSESHSC  420
WKSHIRTSQR TNV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	8e-43	G2-like family protein