PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027105580.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 337aa MW: 37872.3 Da PI: 6.3524

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027105580.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.8	8e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed+ l +++k +G g W++ +++ g++R++k+c++rw +yl XP_027105580.1 14 RGAWTPLEDKTLTEYIKSHGAGKWASLPKRAGLKRCGKSCRLRWMNYL 61 89********************************************97 PP
2	Myb_DNA-binding	50.2	6e-16	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_027105580.1 67 RGNITDDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence
MGRRPCCAKE GLNRGAWTPL EDKTLTEYIK SHGAGKWASL PKRAGLKRCG KSCRLRWMNY 60 LRSDIKRGNI TDDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT KIVKKIQGRQ 120 HLPACSSAPL TKPSSSRSRS PPSLQNLTRT DQPPNSEKLE LKSCTHVIRT KARRLTKVFI 180 DEDLQTSAGT QQPDIIAPEE AQAPPSSADA KDNFNKTPTD HNNTVGAEQP LGVVMESPST 240 FSGEEGYSSG FMMDFEMDDK YFFDFLSTDV VQFAHEFFEG VVQGTNIETN YEVETNDFPP 300 NSCPTALSHD DDDDHNRADL GSITTFLHPA LAWFHED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	3e-59	MYB family protein