PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027105382.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HB-other

Protein Properties

Length: 1663aa MW: 185957 Da PI: 5.1994

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027105382.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55	1.4e-17	26	81	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le+ +e++ yps+++r+ L +klgLt+rq ++WF+ rR k+kk XP_027105382.1 26 PKRQMKTPFQLEVLEKTYENETYPSEATRAVLMEKLGLTDRQLQMWFCHRRLKDKK 81 69****************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1663 aa Download sequence
MDAGSDGEGN SNRNLNQSPS EGQKKPKRQM KTPFQLEVLE KTYENETYPS EATRAVLMEK 60 LGLTDRQLQM WFCHRRLKDK KEAAGMAAMK PRSATGSVGK RGLMDSPRDE MMMAEPGSEN 120 LSSSGSGSSE FDNGDEMPMV PIRYFESPRT VLERRVIACV EAQLGEPLRE DGPILGVEFD 180 ELPPGAFGAP IVTAEHRERY RHSYDNKPYG SYDTKQIKAV PSSHQESAEP KIRSDAYGQV 240 APPYLYDSPV AGPAGKTLPL MQGNGHLSRD YGLEGQASSA SILSQQGRQG HLPSPPTHDA 300 FISNNEDVMQ MERKRKGDEA RIEREVQAQE KRIRKELEKQ DLLRRKREEQ MKKEMEKQDR 360 ERKKEELRMM REQQRKEERC QREEKREMER REKFMQKELL RAERKKQKEE LRREKEAARQ 420 KAAMERAAAR RIAKESLELI EDERLELMEL AASSKGLSSI VSLDYDTLQG LESFRESLCK 480 FPPESVKLKK PFAVRPWIDS EDNVGKLLMV WRFCITFADV LGLWPFTLDE FIQALHDYDS 540 RLLGEIHIAL LRMIIKDIED VVRTPSGGPG TNQYSAVNPE GGHPHIVEGA YVWGFDIRTW 600 QKHLNPLTWP EILRQFALSA GFGPQLKKKS TERGGLNDSE TKGCEDIVSA LRNGSAAENA 660 VAIMQEKGFS LQRKSRHRLT PGTVKFAAYH VLALEGSKGL NVLELADKIQ KSGLRDLTTS 720 KTPEASISVA LSRDPILFER IAPSTYNVRP AYRKDPADAE AIISAAREKI QRFVNGVLTG 780 QNAEDEERDD DSDCDVAEGP EVDDLGTPSE ANKIGEGCNE AGTCSGNGKD NLSDDIAVEN 840 EFGSDGASNS DQAAEIDESR SGEPWVQGLT EGEYSELSVE ERLNALVILV GIANEGNSIR 900 VILEDRLDAA NAIKKQMWTE AQLDKRRMKE EIITKFSESN YGATAMEGSQ SPLGLVDNRN 960 GEASLDLMEK DEPAGGLDNA HNHVDTLAIE KSSFTNDASF AQISNSIQQN NFTAERSRMQ 1020 MKAFIGHIAE EMYVYRSLPL GSDRRRNRYW LFVASPSSHD PGSGRIFVES PDGFWRLLDS 1080 EEAFDALSTS LDMRGIRESH LHIMLQKIEV PFRERVRKNL SFNCIEGKEG MKTGDELAEV 1140 SSSPGCNSGL DSPSSTVCGM NSDSLEPSSS FKIELGRNET ERENALKRYE DFQIWMWREC 1200 FNSSVLRSLT YGKNRCTPLL GTCHLCFDSY MNVECHGHSC HTTSKVGNKE GLVEQTIHEE 1260 KVKVEPLNFG GSNSSHPLRI RLIKVLLNSL EASVPHNALQ SSWTGDLRKI WAAKLLNASR 1320 TDDLLQILTQ FEGAIKRDYL SSSFETTEEL LCYCASSKVS GYDFAHRGSV SQLPWIPQTT 1380 SAVALRLLEL DTSILHGQHE KPKLPDEKKV ENLIKVPSKY SNTGDTQKVP TTDSKRDKQQ 1440 LKEETWDYTG NASGSSDYKQ VIRGRGSGRP RGRWPKGFAG SVSESGRRSL KHGGTLTEAL 1500 MQQGERSYGH KHGRGRRTVR KRRTEKKFSE ETLPGRLGDR GSIRIVSGLP RHTAGAERVV 1560 NKNVGETEDN SNSTDDGVDS DDNAPETTYD FGKWDAGFTV APHRNSEMME MSDEEGDDSE 1620 DDNGGDEDGE GDIGINDYDS DRQGDDNVDD EGSDSLVSGD YSD

Sequence ? help Back to Top

Protein Sequence Length: 1663 aa Download sequence

MDAGSDGEGN SNRNLNQSPS EGQKKPKRQM KTPFQLEVLE KTYENETYPS EATRAVLMEK  60
LGLTDRQLQM WFCHRRLKDK KEAAGMAAMK PRSATGSVGK RGLMDSPRDE MMMAEPGSEN  120
LSSSGSGSSE FDNGDEMPMV PIRYFESPRT VLERRVIACV EAQLGEPLRE DGPILGVEFD  180
ELPPGAFGAP IVTAEHRERY RHSYDNKPYG SYDTKQIKAV PSSHQESAEP KIRSDAYGQV  240
APPYLYDSPV AGPAGKTLPL MQGNGHLSRD YGLEGQASSA SILSQQGRQG HLPSPPTHDA  300
FISNNEDVMQ MERKRKGDEA RIEREVQAQE KRIRKELEKQ DLLRRKREEQ MKKEMEKQDR  360
ERKKEELRMM REQQRKEERC QREEKREMER REKFMQKELL RAERKKQKEE LRREKEAARQ  420
KAAMERAAAR RIAKESLELI EDERLELMEL AASSKGLSSI VSLDYDTLQG LESFRESLCK  480
FPPESVKLKK PFAVRPWIDS EDNVGKLLMV WRFCITFADV LGLWPFTLDE FIQALHDYDS  540
RLLGEIHIAL LRMIIKDIED VVRTPSGGPG TNQYSAVNPE GGHPHIVEGA YVWGFDIRTW  600
QKHLNPLTWP EILRQFALSA GFGPQLKKKS TERGGLNDSE TKGCEDIVSA LRNGSAAENA  660
VAIMQEKGFS LQRKSRHRLT PGTVKFAAYH VLALEGSKGL NVLELADKIQ KSGLRDLTTS  720
KTPEASISVA LSRDPILFER IAPSTYNVRP AYRKDPADAE AIISAAREKI QRFVNGVLTG  780
QNAEDEERDD DSDCDVAEGP EVDDLGTPSE ANKIGEGCNE AGTCSGNGKD NLSDDIAVEN  840
EFGSDGASNS DQAAEIDESR SGEPWVQGLT EGEYSELSVE ERLNALVILV GIANEGNSIR  900
VILEDRLDAA NAIKKQMWTE AQLDKRRMKE EIITKFSESN YGATAMEGSQ SPLGLVDNRN  960
GEASLDLMEK DEPAGGLDNA HNHVDTLAIE KSSFTNDASF AQISNSIQQN NFTAERSRMQ  1020
MKAFIGHIAE EMYVYRSLPL GSDRRRNRYW LFVASPSSHD PGSGRIFVES PDGFWRLLDS  1080
EEAFDALSTS LDMRGIRESH LHIMLQKIEV PFRERVRKNL SFNCIEGKEG MKTGDELAEV  1140
SSSPGCNSGL DSPSSTVCGM NSDSLEPSSS FKIELGRNET ERENALKRYE DFQIWMWREC  1200
FNSSVLRSLT YGKNRCTPLL GTCHLCFDSY MNVECHGHSC HTTSKVGNKE GLVEQTIHEE  1260
KVKVEPLNFG GSNSSHPLRI RLIKVLLNSL EASVPHNALQ SSWTGDLRKI WAAKLLNASR  1320
TDDLLQILTQ FEGAIKRDYL SSSFETTEEL LCYCASSKVS GYDFAHRGSV SQLPWIPQTT  1380
SAVALRLLEL DTSILHGQHE KPKLPDEKKV ENLIKVPSKY SNTGDTQKVP TTDSKRDKQQ  1440
LKEETWDYTG NASGSSDYKQ VIRGRGSGRP RGRWPKGFAG SVSESGRRSL KHGGTLTEAL  1500
MQQGERSYGH KHGRGRRTVR KRRTEKKFSE ETLPGRLGDR GSIRIVSGLP RHTAGAERVV  1560
NKNVGETEDN SNSTDDGVDS DDNAPETTYD FGKWDAGFTV APHRNSEMME MSDEEGDDSE  1620
DDNGGDEDGE GDIGINDYDS DRQGDDNVDD EGSDSLVSGD YSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	82	RRLKDKKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	HB-other family protein