PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027105381.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HB-other

Protein Properties

Length: 1665aa MW: 186099 Da PI: 5.1994

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027105381.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55	1.4e-17	26	81	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le+ +e++ yps+++r+ L +klgLt+rq ++WF+ rR k+kk XP_027105381.1 26 PKRQMKTPFQLEVLEKTYENETYPSEATRAVLMEKLGLTDRQLQMWFCHRRLKDKK 81 69****************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1665 aa Download sequence
MDAGSDGEGN SNRNLNQSPS EGQKKPKRQM KTPFQLEVLE KTYENETYPS EATRAVLMEK 60 LGLTDRQLQM WFCHRRLKDK KEAAGMAAMK PRSATGSVGK RGLMDSPRDE MMMAEPGSEN 120 LSSSGSGSSE FDNGDEMPMV PIRYFESPRT VLERRVIACV EAQLGEPLRE DGPILGVEFD 180 ELPPGAFGAP IVTAEHRERY RHSYDNKPYG SYDTKQIKAV PSSHQESAEP KIRSDAYGQV 240 APPYLYDSPV AGPAGKTLPL MQGNGHLSRD YGLEGQASSA SILSQQGRQG HLPSPPTHDA 300 FISNNEDVMQ MERKRKGDEA RIEREVQAQE KRIRKELEKQ DLLRRKREEQ MKKEMEKQDR 360 ERKKEELRMM REQQRKEERC QREEKREMER REKFMQKELL RAERKKQKEE LRREKEAARQ 420 KAAMERAAAR RIAKESLELI EDERLELMEL AASSKGLSSI VSLDYDTLQG LESFRESLCK 480 FPPESVKLKK PFAVRPWIDS EDNVGKLLMV WRFCITFADV LGLWPFTLDE FIQALHDYDS 540 RLLGEIHIAL LRMIIKDIED VVRTPSGGPG TNQYSAVNPE GGHPHIVEGA YVWGFDIRTW 600 QKHLNPLTWP EILRQFALSA GFGPQLKKKS TERGGLNDSE TKGCEDIVSA LRNGSAAENA 660 VAIMQEKGFS LQRKSRHRLT PGTVKFAAYH VLALEGSKGL NVLELADKIQ KSGLRDLTTS 720 KTPEASISVA LSRDPILFER IAPSTYNVRP AYRKDPADAE AIISAAREKI QRFVNGVLTG 780 QNAEDEERDD DSDCDVAEGP EVDDLGTPSE ANKIGEGCNE AGTCSGNGKD NLSDDIAVEN 840 EFGSDAAGAS NSDQAAEIDE SRSGEPWVQG LTEGEYSELS VEERLNALVI LVGIANEGNS 900 IRVILEDRLD AANAIKKQMW TEAQLDKRRM KEEIITKFSE SNYGATAMEG SQSPLGLVDN 960 RNGEASLDLM EKDEPAGGLD NAHNHVDTLA IEKSSFTNDA SFAQISNSIQ QNNFTAERSR 1020 MQMKAFIGHI AEEMYVYRSL PLGSDRRRNR YWLFVASPSS HDPGSGRIFV ESPDGFWRLL 1080 DSEEAFDALS TSLDMRGIRE SHLHIMLQKI EVPFRERVRK NLSFNCIEGK EGMKTGDELA 1140 EVSSSPGCNS GLDSPSSTVC GMNSDSLEPS SSFKIELGRN ETERENALKR YEDFQIWMWR 1200 ECFNSSVLRS LTYGKNRCTP LLGTCHLCFD SYMNVECHGH SCHTTSKVGN KEGLVEQTIH 1260 EEKVKVEPLN FGGSNSSHPL RIRLIKVLLN SLEASVPHNA LQSSWTGDLR KIWAAKLLNA 1320 SRTDDLLQIL TQFEGAIKRD YLSSSFETTE ELLCYCASSK VSGYDFAHRG SVSQLPWIPQ 1380 TTSAVALRLL ELDTSILHGQ HEKPKLPDEK KVENLIKVPS KYSNTGDTQK VPTTDSKRDK 1440 QQLKEETWDY TGNASGSSDY KQVIRGRGSG RPRGRWPKGF AGSVSESGRR SLKHGGTLTE 1500 ALMQQGERSY GHKHGRGRRT VRKRRTEKKF SEETLPGRLG DRGSIRIVSG LPRHTAGAER 1560 VVNKNVGETE DNSNSTDDGV DSDDNAPETT YDFGKWDAGF TVAPHRNSEM MEMSDEEGDD 1620 SEDDNGGDED GEGDIGINDY DSDRQGDDNV DDEGSDSLVS GDYSD

Sequence ? help Back to Top

Protein Sequence Length: 1665 aa Download sequence

MDAGSDGEGN SNRNLNQSPS EGQKKPKRQM KTPFQLEVLE KTYENETYPS EATRAVLMEK  60
LGLTDRQLQM WFCHRRLKDK KEAAGMAAMK PRSATGSVGK RGLMDSPRDE MMMAEPGSEN  120
LSSSGSGSSE FDNGDEMPMV PIRYFESPRT VLERRVIACV EAQLGEPLRE DGPILGVEFD  180
ELPPGAFGAP IVTAEHRERY RHSYDNKPYG SYDTKQIKAV PSSHQESAEP KIRSDAYGQV  240
APPYLYDSPV AGPAGKTLPL MQGNGHLSRD YGLEGQASSA SILSQQGRQG HLPSPPTHDA  300
FISNNEDVMQ MERKRKGDEA RIEREVQAQE KRIRKELEKQ DLLRRKREEQ MKKEMEKQDR  360
ERKKEELRMM REQQRKEERC QREEKREMER REKFMQKELL RAERKKQKEE LRREKEAARQ  420
KAAMERAAAR RIAKESLELI EDERLELMEL AASSKGLSSI VSLDYDTLQG LESFRESLCK  480
FPPESVKLKK PFAVRPWIDS EDNVGKLLMV WRFCITFADV LGLWPFTLDE FIQALHDYDS  540
RLLGEIHIAL LRMIIKDIED VVRTPSGGPG TNQYSAVNPE GGHPHIVEGA YVWGFDIRTW  600
QKHLNPLTWP EILRQFALSA GFGPQLKKKS TERGGLNDSE TKGCEDIVSA LRNGSAAENA  660
VAIMQEKGFS LQRKSRHRLT PGTVKFAAYH VLALEGSKGL NVLELADKIQ KSGLRDLTTS  720
KTPEASISVA LSRDPILFER IAPSTYNVRP AYRKDPADAE AIISAAREKI QRFVNGVLTG  780
QNAEDEERDD DSDCDVAEGP EVDDLGTPSE ANKIGEGCNE AGTCSGNGKD NLSDDIAVEN  840
EFGSDAAGAS NSDQAAEIDE SRSGEPWVQG LTEGEYSELS VEERLNALVI LVGIANEGNS  900
IRVILEDRLD AANAIKKQMW TEAQLDKRRM KEEIITKFSE SNYGATAMEG SQSPLGLVDN  960
RNGEASLDLM EKDEPAGGLD NAHNHVDTLA IEKSSFTNDA SFAQISNSIQ QNNFTAERSR  1020
MQMKAFIGHI AEEMYVYRSL PLGSDRRRNR YWLFVASPSS HDPGSGRIFV ESPDGFWRLL  1080
DSEEAFDALS TSLDMRGIRE SHLHIMLQKI EVPFRERVRK NLSFNCIEGK EGMKTGDELA  1140
EVSSSPGCNS GLDSPSSTVC GMNSDSLEPS SSFKIELGRN ETERENALKR YEDFQIWMWR  1200
ECFNSSVLRS LTYGKNRCTP LLGTCHLCFD SYMNVECHGH SCHTTSKVGN KEGLVEQTIH  1260
EEKVKVEPLN FGGSNSSHPL RIRLIKVLLN SLEASVPHNA LQSSWTGDLR KIWAAKLLNA  1320
SRTDDLLQIL TQFEGAIKRD YLSSSFETTE ELLCYCASSK VSGYDFAHRG SVSQLPWIPQ  1380
TTSAVALRLL ELDTSILHGQ HEKPKLPDEK KVENLIKVPS KYSNTGDTQK VPTTDSKRDK  1440
QQLKEETWDY TGNASGSSDY KQVIRGRGSG RPRGRWPKGF AGSVSESGRR SLKHGGTLTE  1500
ALMQQGERSY GHKHGRGRRT VRKRRTEKKF SEETLPGRLG DRGSIRIVSG LPRHTAGAER  1560
VVNKNVGETE DNSNSTDDGV DSDDNAPETT YDFGKWDAGF TVAPHRNSEM MEMSDEEGDD  1620
SEDDNGGDED GEGDIGINDY DSDRQGDDNV DDEGSDSLVS GDYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	82	RRLKDKKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	HB-other family protein