PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027105270.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family LSD
Protein Properties Length: 225aa    MW: 24194.4 Da    PI: 4.1964
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027105270.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD136.76.8e-12174198125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     CggC +lL+YP+GApsVRC +C  V
  XP_027105270.1 174 CGGCAVLLMYPYGAPSVRCCSCRSV 198
                     **********************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MGTEEKDLVK GGGGGGEEDD DDDDDGPPPG FHCIATQIEE NLVKEEKDAE INENEDDEDE  60
DVDGPPPGWS SIPPATFQPV HPSDVEMSDK QKEDENEEGP PPGWHSVPLA SQSSEAVLAD  120
TQTGNHEDRT KYIDEGSQPG QKSVPPLKLL PPTPPRPLPA VSSPSDHQVG QVKCGGCAVL  180
LMYPYGAPSV RCCSCRSVTE IGAHNRRPPL SVQQARRPLS VNRVH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.15e-17LSD family protein