PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027105197.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 478aa MW: 53785.4 Da PI: 10.5445 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.9 | 4e-07 | 12 | 47 | 2 | 38 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 +rW t+E+++l av ++G+ +W+ +a+++ Rtl+ XP_027105197.1 12 KRWGTWEELILGGAVLRHGTQDWNVVASELR-ARTLY 47 69*****************************.99987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 478 aa Download sequence |
MGAEAMVVVP DKRWGTWEEL ILGGAVLRHG TQDWNVVASE LRARTLYPYC FTPQACKAKY 60 EDLRRRYSGS NAWFDELRKR RVAELKRELE KSEDSIGSLE TKIEILKAEK RHSSKADCGS 120 NGTESPAPLL RSDGNESFGK ETSKDGLSAS SFTQDTSISW SLYRQIPVLV SCAGTDIKQE 180 VSVSLEEQKD LHTNKLVETG NREGGTPRKR RGMRKRKDCN IEAKEGSIGE SDNHGSTNVV 240 SSSRCKETST SDCDQTIRLP GRDGNTKGAC QMRSDCLIGI FNSIAEYKVA FVFRHRLDSQ 300 KRARYKKIIR QHMDFDMIRS RLVSCSIHSA RELFRDLLLL ANNALVFYSK RTREYKSAVA 360 LRDIVLKAYR QHFKGSYNKA TSASLPMRSL YNPPVKPRSA RRRPSQPKQS AKLDKAEKFV 420 VNAPKVHPKP SDPDANVPLQ SLLPAKKGVK RPLKVKTASA KPQSKTPLPK DKKAARQR |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 64 | 81 | RRRYSGSNAWFDELRKRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42150.1 | 1e-37 | MYB_related family protein |