PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027105174.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 851aa MW: 93611.5 Da PI: 8.2369

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027105174.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.7	5.2e-19	338	437	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_027105174.1 338 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDLKGKEWVFQFRFwpNNNSRMYVLE-GITPCIQSMQLQAGDVVTFSRIE-PEGK 430 89************************555566778***********99899999999.*******************887.5665 PP .EEEEE- CS B3 92 lvvkvfr 98 lv++ ++ XP_027105174.1 431 LVMGCRK 437 6665554 PP

Sequence ? help Back to Top
Protein Sequence Length: 851 aa Download sequence
MAASAAASTA SLAKVCFNSN CKETLERPRK GWRRRTGEFA DLCDRCASAY EDGKFCESFH 60 LDASGWRCCE SCGKQIHCGC IVSFHMFVLL DAGGIECITC ARKSFILTPN PAWPPPSLFL 120 PLQPERIKDI SVKNWSPIAG SGPVPWRQAP SLFNGSAIQS ELQPRVPTPI EFDVSGGVDR 180 LQLNERLSSS LEKKKKEESF ERLMNGSLRI CSSEFGSGTF GAMGKEQSFP FSNASPETGY 240 PSTSDFSVAT APALENGSNN HTKVSGTLIQ QTTQPTPSEK RPCGHNPADS SEGQPRNGRA 300 RPEVRARSQL LPRYWPRITD QELQQISGDS NSVITPLFEK MLSASDAGRI GRLVLPKKCA 360 EAYFPPISQP EGLPLKVQDL KGKEWVFQFR FWPNNNSRMY VLEGITPCIQ SMQLQAGDVV 420 TFSRIEPEGK LVMGCRKASC APSDQGNEAS NAGQGYSSNG DVAPKSNKAG EITKPGELVS 480 TNSRMKGYSA SSSCPSLNRA AAKSGSSWPE HDKPVHVAKV VEAKPAVRSK RKNSTLGLKS 540 KRLRIENEDM LELKVTWEQV QGLLRPPPNK APSVFVIEGC EIEEYEDAPV IGRPTIPGTD 600 HQGKKIQWAQ CEECSKWRKI PADALLPSKW TCSKNLWDPE RSLCSTVQEL SMEKLQDLLP 660 AISKTASKKI RAPKQDPDSV EALEGLDALA NLAIQEKSGS FQASQATTKH PRHKAGCSCI 720 VCIQPPSGKG PKHKQPCDCI VCKSLKRRHK TMMLKKEKNL TEKIPETSDQ MLSMQELPEQ 780 VPNGLVNKSP KEEVVSDEGC IDNPDEMCSA LPFKGQIDLN IQPEKEEELS PSFCSGNIPR 840 SMLETRERHN R

Sequence ? help Back to Top

Protein Sequence Length: 851 aa Download sequence

MAASAAASTA SLAKVCFNSN CKETLERPRK GWRRRTGEFA DLCDRCASAY EDGKFCESFH  60
LDASGWRCCE SCGKQIHCGC IVSFHMFVLL DAGGIECITC ARKSFILTPN PAWPPPSLFL  120
PLQPERIKDI SVKNWSPIAG SGPVPWRQAP SLFNGSAIQS ELQPRVPTPI EFDVSGGVDR  180
LQLNERLSSS LEKKKKEESF ERLMNGSLRI CSSEFGSGTF GAMGKEQSFP FSNASPETGY  240
PSTSDFSVAT APALENGSNN HTKVSGTLIQ QTTQPTPSEK RPCGHNPADS SEGQPRNGRA  300
RPEVRARSQL LPRYWPRITD QELQQISGDS NSVITPLFEK MLSASDAGRI GRLVLPKKCA  360
EAYFPPISQP EGLPLKVQDL KGKEWVFQFR FWPNNNSRMY VLEGITPCIQ SMQLQAGDVV  420
TFSRIEPEGK LVMGCRKASC APSDQGNEAS NAGQGYSSNG DVAPKSNKAG EITKPGELVS  480
TNSRMKGYSA SSSCPSLNRA AAKSGSSWPE HDKPVHVAKV VEAKPAVRSK RKNSTLGLKS  540
KRLRIENEDM LELKVTWEQV QGLLRPPPNK APSVFVIEGC EIEEYEDAPV IGRPTIPGTD  600
HQGKKIQWAQ CEECSKWRKI PADALLPSKW TCSKNLWDPE RSLCSTVQEL SMEKLQDLLP  660
AISKTASKKI RAPKQDPDSV EALEGLDALA NLAIQEKSGS FQASQATTKH PRHKAGCSCI  720
VCIQPPSGKG PKHKQPCDCI VCKSLKRRHK TMMLKKEKNL TEKIPETSDQ MLSMQELPEQ  780
VPNGLVNKSP KEEVVSDEGC IDNPDEMCSA LPFKGQIDLN IQPEKEEELS PSFCSGNIPR  840
SMLETRERHN R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-147	B3 family protein