PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027105173.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 852aa MW: 93739.6 Da PI: 8.2369

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027105173.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.7	5.2e-19	338	437	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_027105173.1 338 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDLKGKEWVFQFRFwpNNNSRMYVLE-GITPCIQSMQLQAGDVVTFSRIE-PEGK 430 89************************555566778***********99899999999.*******************887.5665 PP .EEEEE- CS B3 92 lvvkvfr 98 lv++ ++ XP_027105173.1 431 LVMGCRK 437 6665554 PP

Sequence ? help Back to Top
Protein Sequence Length: 852 aa Download sequence
MAASAAASTA SLAKVCFNSN CKETLERPRK GWRRRTGEFA DLCDRCASAY EDGKFCESFH 60 LDASGWRCCE SCGKQIHCGC IVSFHMFVLL DAGGIECITC ARKSFILTPN PAWPPPSLFL 120 PLQPERIKDI SVKNWSPIAG SGPVPWRQAP SLFNGSAIQS ELQPRVPTPI EFDVSGGVDR 180 LQLNERLSSS LEKKKKEESF ERLMNGSLRI CSSEFGSGTF GAMGKEQSFP FSNASPETGY 240 PSTSDFSVAT APALENGSNN HTKVSGTLIQ QTTQPTPSEK RPCGHNPADS SEGQPRNGRA 300 RPEVRARSQL LPRYWPRITD QELQQISGDS NSVITPLFEK MLSASDAGRI GRLVLPKKCA 360 EAYFPPISQP EGLPLKVQDL KGKEWVFQFR FWPNNNSRMY VLEGITPCIQ SMQLQAGDVV 420 TFSRIEPEGK LVMGCRKASC APSDQGNEAS NAGQGYSSNG DVAPKSNKAG EITKPGELVS 480 TNSRMKGYSA SSSCPSLNRA AAKSGSSWPE HDKPVHVAKV VEAKPAVRSK RKNSTLGLKS 540 KRLRIENEDM LELKVTWEQV QGLLRPPPNK APSVFVIEGC EIEEYEQDAP VIGRPTIPGT 600 DHQGKKIQWA QCEECSKWRK IPADALLPSK WTCSKNLWDP ERSLCSTVQE LSMEKLQDLL 660 PAISKTASKK IRAPKQDPDS VEALEGLDAL ANLAIQEKSG SFQASQATTK HPRHKAGCSC 720 IVCIQPPSGK GPKHKQPCDC IVCKSLKRRH KTMMLKKEKN LTEKIPETSD QMLSMQELPE 780 QVPNGLVNKS PKEEVVSDEG CIDNPDEMCS ALPFKGQIDL NIQPEKEEEL SPSFCSGNIP 840 RSMLETRERH NR

Sequence ? help Back to Top

Protein Sequence Length: 852 aa Download sequence

MAASAAASTA SLAKVCFNSN CKETLERPRK GWRRRTGEFA DLCDRCASAY EDGKFCESFH  60
LDASGWRCCE SCGKQIHCGC IVSFHMFVLL DAGGIECITC ARKSFILTPN PAWPPPSLFL  120
PLQPERIKDI SVKNWSPIAG SGPVPWRQAP SLFNGSAIQS ELQPRVPTPI EFDVSGGVDR  180
LQLNERLSSS LEKKKKEESF ERLMNGSLRI CSSEFGSGTF GAMGKEQSFP FSNASPETGY  240
PSTSDFSVAT APALENGSNN HTKVSGTLIQ QTTQPTPSEK RPCGHNPADS SEGQPRNGRA  300
RPEVRARSQL LPRYWPRITD QELQQISGDS NSVITPLFEK MLSASDAGRI GRLVLPKKCA  360
EAYFPPISQP EGLPLKVQDL KGKEWVFQFR FWPNNNSRMY VLEGITPCIQ SMQLQAGDVV  420
TFSRIEPEGK LVMGCRKASC APSDQGNEAS NAGQGYSSNG DVAPKSNKAG EITKPGELVS  480
TNSRMKGYSA SSSCPSLNRA AAKSGSSWPE HDKPVHVAKV VEAKPAVRSK RKNSTLGLKS  540
KRLRIENEDM LELKVTWEQV QGLLRPPPNK APSVFVIEGC EIEEYEQDAP VIGRPTIPGT  600
DHQGKKIQWA QCEECSKWRK IPADALLPSK WTCSKNLWDP ERSLCSTVQE LSMEKLQDLL  660
PAISKTASKK IRAPKQDPDS VEALEGLDAL ANLAIQEKSG SFQASQATTK HPRHKAGCSC  720
IVCIQPPSGK GPKHKQPCDC IVCKSLKRRH KTMMLKKEKN LTEKIPETSD QMLSMQELPE  780
QVPNGLVNKS PKEEVVSDEG CIDNPDEMCS ALPFKGQIDL NIQPEKEEEL SPSFCSGNIP  840
RSMLETRERH NR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-145	B3 family protein