PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027104979.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | ARF | ||||||||
Protein Properties | Length: 700aa MW: 76785.9 Da PI: 6.4006 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74 | 1.8e-23 | 124 | 225 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF + + XP_027104979.1 124 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RAE 214 89****************************986445444..8999*********************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_027104979.1 215 NGDLCVGIRRA 225 8999****997 PP | |||||||
2 | Auxin_resp | 111 | 1.1e-36 | 294 | 377 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++Fev+Y+Prast+eFvvk++ v++a++++++ GmRfkm fetedss++++ +Gt+++v+ d ++WpnS+Wr+L+ XP_027104979.1 294 AANLAASGQAFEVIYYPRASTPEFVVKASAVKAAIRIQWCSGMRFKMPFETEDSSRISWfMGTISSVQVDDRIHWPNSPWRLLQ 377 7899******************************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 700 aa Download sequence |
MITVMNSGNE PMNEVEKSLD PQLWHACAGG MVQMSPVNSK VFYFPQGHAE HAHKSVDFGT 60 FCTIPPLILC RVSSIKYLAD TETDEVFAKI RLVPLRGNEC SDDDGDDGLL AFDKNDGQEK 120 PSSFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYSAEPP VQTILAKDVH GEIWKFRHIY 180 RGTPRRHLLT TGWSNFVNQK KLVAGDSIVF LRAENGDLCV GIRRAKRGIG GGPEAPSGWN 240 TSAGNCTSSL YGGFSRLLGE EENRIMRNPK GGTNNSDIGA RGRGKVRAES VVEAANLAAS 300 GQAFEVIYYP RASTPEFVVK ASAVKAAIRI QWCSGMRFKM PFETEDSSRI SWFMGTISSV 360 QVDDRIHWPN SPWRLLQVAW DEPDLLQNVK RVSPWLVELV SNMPAINLCP FSPPRKKLRL 420 PQPPEFPLVG QLPMPSLFSN PLSPSSPLCC LPDKIPAGIQ GARHAQFGLP SSEPHFNKLQ 480 AGLFPFKLKQ LEHAAAAASR IPNSSCFMED YESKDNVSCV LTIGNSVQGS KPNVRTEAPL 540 FVLFGQPILT EQQISQSSSG DTARSSLSER NPENTVTVSG GSGSGVLQSG HPENSLDQVL 600 PWYKDPKLEF GLETGHCKVF MESEDVGRTL DLSVFGSYEE LYGKLAEMFG LERSEMLSNV 660 LYQDPAGVVK HSGDEPFSDF LKAARRITIL TDSGSDNVCR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | ARF family protein |