PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027104962.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C2H2 | ||||||||
Protein Properties | Length: 1448aa MW: 161391 Da PI: 6.9369 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00086 | 1336 | 1359 | 1 | 22 |
EEET..TTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt 22 +kC+ C +sF +k +L+ H+r XP_027104962.1 1336 HKCSieGCRMSFQTKAELVLHMRD 1359 799999****************96 PP | |||||||
2 | zf-C2H2 | 14.1 | 0.00013 | 1360 | 1383 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk+Fs++ + ++H+r+H XP_027104962.1 1360 RCPvqGCGKRFSSHKYATSHQRVH 1383 79999*****************99 PP | |||||||
3 | zf-C2H2 | 11.5 | 0.00094 | 1419 | 1445 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg sF+ s++ rH r+ H XP_027104962.1 1419 YKCKvdGCGLSFRFVSDFSRHRRKtgH 1445 99*********************9777 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1448 aa Download sequence |
MVLNIVDRMG AVEIPKWLEE LPLAPEFRPT DTEFADPIAY ISKIEKKASA FGICKVIPPV 60 PKPSKRYVLY NLNKSLSKCP ELGSEVNVSS SMNMNDGAEG SNGSEARAVF TTRHQELGQN 120 GKRVKGAAGN QLIGAPKQVW QSGEVYTLEQ FEAKSKNFAK SQLGVVKEVS PLVIEAMFWK 180 AASEKPIYVE YANDVPGSGF GEPEGSFRYF NRRRRRRRKR GTFDRNNQGS SCNNDHVTNC 240 SSTVNYSSVD KDAQASNLHS EVSGASTSLP SMSLDQSENF SDGKFSNASN EMHGTAGWKL 300 SNSSWNLQVI ARSPGSLTRY MPDDIPGVTS PMVYIGMLFS WFAWHVEDHE LHSLNFLHTG 360 SPKTWYSVPG DYAFDFEEVV RLQAYGGNTD PLDALTLLGE KTTLFSPEVI VAAGIPCCRL 420 VQNPGEFVVT FPRAYHVGFS HGFNCGEAAN FSTPKWLTIA KEAAVRRAAM NYLPMLSHQQ 480 LLYLLTMSFV SRVPRSLLPG ARSSRLKDRQ KEERELSVKK AFIEDILKEN HLLTILLQKN 540 SSYRVVLWDV DLLPASSKDS ELCSTVVTDG TQRREDSHPD NCSNQDLYTQ MSLYMDTITD 600 FYVDDADDIQ NDYQVDSGTL PCVACGILGF PFMAVVQPSE QASRDLLPED QAMTQQLGVC 660 QPAGCKSLDL DFRAESCIPE TRKPVKKNIN HPDEASPFAE SSPSTCSHME EDALSVDINT 720 SSFPVHVTAS SAVKFDGGWN LSTGYFRPQL FCLEHAIETV ELLRPKGGAN VLGICHSDFQ 780 KIKAHSAVVA EEISIPFNYN EIPLGNASQE DLYLIDHAIE NQEKDEGAQD WTSKLNLNLR 840 HCVKMRKNFP SQKVKHALAL GGLFSDGVLH LKALKWQSRK SRSKRNADPT NFSKPSVSIQ 900 TEKVEEPVEK SGSRMSRKLG QVMIQYYRKR HKSKPRGSEG AIKALVVSEK HPSDEISGAD 960 SGNCKEKERD MSMNTHVRVE GAGKGASGPT CLAYSRKSKL RNEGQKVVSG GGLNENLSPL 1020 KLVDSSIATN PVAGNINVHT GSGMSDELVE LNKNYDLLLK DSHKLSMINV AEETDENHDS 1080 VNSENSAGSL GISVYDTESS EVMREDEIVC RINMAKMTCD VVTTNESERK YHRNADGDVL 1140 MKEASEPAPS CPHADESSGE RCNQQVETTV LDKCQMSSGE MEKEISSMKG ADRERAVSSD 1200 VLTSNTSNPS LTEELEAPRE MPADDQQQRD NQSCTLFENK EVDDAISTLE QFQHTEKMRS 1260 KRKREVDIQN EDQPNFGSFS RSPCEGLRPR TKRDAAGDTT GAEKPFEDLS KGRKVNKHLN 1320 GSDLHKHKRE QKRCSHKCSI EGCRMSFQTK AELVLHMRDR CPVQGCGKRF SSHKYATSHQ 1380 RVHDDDRPLK CPWKGCRMTF KWAWARTEHI RVHTGERPYK CKVDGCGLSF RFVSDFSRHR 1440 RKTGHYVN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 208 | 217 | RYFNRRRRRR |
2 | 212 | 217 | RRRRRR |
3 | 212 | 218 | RRRRRRR |
4 | 212 | 220 | RRRRRRRKR |
5 | 213 | 218 | RRRRRR |
6 | 213 | 220 | RRRRRRKR |
7 | 213 | 219 | RRRRRRR |
8 | 213 | 221 | RRRRRRRKR |
9 | 214 | 220 | RRRRRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 0.0 | C2H2 family protein |