PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027104903.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

NAC

Protein Properties

Length: 406aa MW: 45141.7 Da PI: 5.1461

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027104903.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.4	9.8e-52	37	164	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtdeelv +yL++k+ gk++++ +++ e+d+yk+ePw+L +++k+++ ewyfFs+ d+ky +g+r nrat +gyWkatgkd++v XP_027104903.1 37 LAPGFRFHPTDEELVRYYLRRKACGKPFRF-QAVCEIDVYKSEPWELAcySSLKTRDLEWYFFSPVDRKYGNGSRLNRATGKGYWKATGKDRPVR 130 579***********************99.88**********85336777888*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + k++++g+kktLvf++grap+g++t+Wvmheyrl XP_027104903.1 131 H-KSQTIGMKKTLVFHSGRAPDGKRTNWVMHEYRL 164 .999***************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MGQELVAVAV TPSSSTTAVV GGGIGGSPVG APPPTSLAPG FRFHPTDEEL VRYYLRRKAC 60 GKPFRFQAVC EIDVYKSEPW ELACYSSLKT RDLEWYFFSP VDRKYGNGSR LNRATGKGYW 120 KATGKDRPVR HKSQTIGMKK TLVFHSGRAP DGKRTNWVMH EYRLVDEELE KAGVAQDAFV 180 LCRIFQKSGL GPPNGDRYAP FVEEEWDDDT ALLIPGGEAE DDMANGDEAR VDCNDLTPDI 240 NKTPRLIEHP SEPQGIPFIC KRERSEDPEP LSLGQNKRSK QDGPNSSHAN GSEDSTTTSQ 300 DPPPTMMTTN FSSALLEFPL LESVEPKETQ PASTATFDSS NLEKSVPPGY LKFISNLENE 360 ILNVSMERET LKIEVMRAQA MINILQSRID LLNKENEDLR RLVRGG

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MGQELVAVAV TPSSSTTAVV GGGIGGSPVG APPPTSLAPG FRFHPTDEEL VRYYLRRKAC  60
GKPFRFQAVC EIDVYKSEPW ELACYSSLKT RDLEWYFFSP VDRKYGNGSR LNRATGKGYW  120
KATGKDRPVR HKSQTIGMKK TLVFHSGRAP DGKRTNWVMH EYRLVDEELE KAGVAQDAFV  180
LCRIFQKSGL GPPNGDRYAP FVEEEWDDDT ALLIPGGEAE DDMANGDEAR VDCNDLTPDI  240
NKTPRLIEHP SEPQGIPFIC KRERSEDPEP LSLGQNKRSK QDGPNSSHAN GSEDSTTTSQ  300
DPPPTMMTTN FSSALLEFPL LESVEPKETQ PASTATFDSS NLEKSVPPGY LKFISNLENE  360
ILNVSMERET LKIEVMRAQA MINILQSRID LLNKENEDLR RLVRGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.2	1e-112	NAC family protein