PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027104205.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 228aa MW: 24339.8 Da PI: 8.1229 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 107.3 | 1.2e-33 | 41 | 142 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkal....peeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk +rr+C+++ C+++pyfp ++p +fa vh++FGasnv+k+l+ + pe+ r +++ slvyeA+ar+rdPvyG+++ i++lq+q+e+l XP_027104205.1 41 PCAACKQMRRRCSAKkCPFSPYFPPSEPLRFASVHRVFGASNVSKMLAVWygevPESLRAEVAISLVYEADARLRDPVYGCTAEISALQRQVESL 135 7***********8655*******************************97666658889************************************* PP DUF260 91 kaelall 97 ++ l+++ XP_027104205.1 136 QQLLNSA 142 *988765 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence |
MSAIREKVEK VKIEPDYGHK GLNQIGGGGG GGGEGGRVIR PCAACKQMRR RCSAKKCPFS 60 PYFPPSEPLR FASVHRVFGA SNVSKMLAVW YGEVPESLRA EVAISLVYEA DARLRDPVYG 120 CTAEISALQR QVESLQQLLN SAWDELLKYK NPHHEADIFN AEPPPSHGVA LLPSVATTAA 180 FPPPPSPTVL LVPPPPPTSS GSLLLSSSAS SNQYCPLSAA ADFSTISN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G30340.1 | 3e-42 | LBD family protein |