PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027103892.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 262aa MW: 29418.6 Da PI: 9.0963

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027103892.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	6.1e-12	80	132	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +r h +Er+RR+++ + ++ Lr+llP ++K ++ ++Av+YIk Lq XP_027103892.1 80 KRILHRDIERQRRREMANLYASLRSLLPLdY---VKGKRAISDHMQEAVNYIKCLQ 132 6889***********************66...9*****************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence
MYPLQQGNEL ENQNPCRPCQ PDKILNDLVT LESTASLPPA TSITGKKHHH RRFLPAIQQE 60 NKKQDHEDTT TTNSNQHKLK RILHRDIERQ RRREMANLYA SLRSLLPLDY VKGKRAISDH 120 MQEAVNYIKC LQKNINQLGS RRDRLMIPPC NLSSTFSFSS GNRSTSADSR CLRDCGAIVR 180 VSQGGDGVEV LISISSKEET FPISRVLKML LGEGLDVVSC VSTATNEIKV HKILAEVTDG 240 RKSIDTLALQ HQLMNAINPP ES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	92	KRILHRDIERQRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	5e-33	bHLH family protein