PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027103610.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 377aa MW: 41726.9 Da PI: 6.5748

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027103610.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.3	1.8e-29	148	209	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ g+++pr+YYrCt++ gC ++k+v+rs+edp+++e+tY+g+H+++ XP_027103610.1 148 LDDGFSWRKYGQKDILGAKHPRGYYRCTHRhvqGCLATKQVQRSDEDPTIFEVTYRGRHTCN 209 59*************************99999************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MENSADWELG NLINELMLGR ELAKQLQVHI NAPSSSPESR DSLVHKILNS YEKALNMLKS 60 NAAVGVGERE QSTGTTIAMS ESRSRQNTGL AIGMSDSPRS LSASPHSDDS DREFRDQDSR 120 DVSRKRKTMP RWTKHVQVCP GMGLEGPLDD GFSWRKYGQK DILGAKHPRG YYRCTHRHVQ 180 GCLATKQVQR SDEDPTIFEV TYRGRHTCNQ GSEPKPPAAA AEKPETSSQG KHRQVTSQPQ 240 QNQQGILLSF QRDLKVNTKD LDSHNQHFPT FDFASTSTTK PETHLFLPSL TDNNFAGDLS 300 PPFMTPVTSG SDYFSVSPTH ISSYAENQNS YASESEFTGL ISAATSTTNS PTVGSDFPFS 360 QIGFDTNFTF DNSGFFS

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MENSADWELG NLINELMLGR ELAKQLQVHI NAPSSSPESR DSLVHKILNS YEKALNMLKS  60
NAAVGVGERE QSTGTTIAMS ESRSRQNTGL AIGMSDSPRS LSASPHSDDS DREFRDQDSR  120
DVSRKRKTMP RWTKHVQVCP GMGLEGPLDD GFSWRKYGQK DILGAKHPRG YYRCTHRHVQ  180
GCLATKQVQR SDEDPTIFEV TYRGRHTCNQ GSEPKPPAAA AEKPETSSQG KHRQVTSQPQ  240
QNQQGILLSF QRDLKVNTKD LDSHNQHFPT FDFASTSTTK PETHLFLPSL TDNNFAGDLS  300
PPFMTPVTSG SDYFSVSPTH ISSYAENQNS YASESEFTGL ISAATSTTNS PTVGSDFPFS  360
QIGFDTNFTF DNSGFFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	128	SRKRKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11070.1	3e-54	WRKY family protein