PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027103361.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 410aa MW: 43747.6 Da PI: 10.8793

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027103361.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.5	9.8e-38	90	198	2	104
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasnsssg... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ ++ s a++++s+ XP_027103361.1 90 PPKRTSTKDRHTKVEGRGRRIRMPATCAARVFQLTKELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsvngtLKVPTTSPAAADNSNtvk 184 689*************************************************************7777733322221111111111111111111 PP TCP 89 ........kaaksaakskksqksa 104 s +++ XP_027103361.1 185 rkrkrpsnY----------SADQH 198 111111110..........11111 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MGSAQKLELH GDQSRNGSNL NNPWPRPPST AVQPLRMPPA PPMAIPLISL KEEPDDHGED 60 KPPIPMARSS QPLPMPTPLQ MRQPVAPPTP PKRTSTKDRH TKVEGRGRRI RMPATCAARV 120 FQLTKELGHK SDGETIRWLL EHAEPAIIAA TGTGTVPAIA MSVNGTLKVP TTSPAAADNS 180 NTVKRKRKRP SNYSADQHVN MPTNTDDNVA TSTGNTSTSS TTTMSTFSSN NPSILAPLMA 240 IQPSTSTTNA SPAMVQNPAI LQVPLVAAIP VVTNISPTFF ILPPPPQVPS SSSTNVPSHV 300 AANQSQILAI PPNVNVNVTP FINVSARPIS AFIASSSTTP SAANALNIQQ LPRFLNVVRG 360 PTTMENLRVN SSATLLPSSS STSSDKSPST RTQVLREFSL EIHDKHEQQN

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MGSAQKLELH GDQSRNGSNL NNPWPRPPST AVQPLRMPPA PPMAIPLISL KEEPDDHGED  60
KPPIPMARSS QPLPMPTPLQ MRQPVAPPTP PKRTSTKDRH TKVEGRGRRI RMPATCAARV  120
FQLTKELGHK SDGETIRWLL EHAEPAIIAA TGTGTVPAIA MSVNGTLKVP TTSPAAADNS  180
NTVKRKRKRP SNYSADQHVN MPTNTDDNVA TSTGNTSTSS TTTMSTFSSN NPSILAPLMA  240
IQPSTSTTNA SPAMVQNPAI LQVPLVAAIP VVTNISPTFF ILPPPPQVPS SSSTNVPSHV  300
AANQSQILAI PPNVNVNVTP FINVSARPIS AFIASSSTTP SAANALNIQQ LPRFLNVVRG  360
PTTMENLRVN SSATLLPSSS STSSDKSPST RTQVLREFSL EIHDKHEQQN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	190	VKRKRKRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	4e-56	TCP family protein